Query= MSMg01no046_i23.b1 MSMg01no046_i23.b1 CHROMAT_FILE:
MSMg01no046_i23.b1 PHD_FILE: MSMg01no046_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:44 2005
(564 letters)
>mm_chr9_79200193_79201151
Length = 959
Score = 975 bits (504), Expect = 0.0
Identities = 546/564 (96%), Gaps = 12/564 (2%)
Strand = Plus / Plus
Query: 4 gaattcttttttaa---ttactatttatttaatgttatgtgagtactctgtcactatctt 60
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttttaaagatt--tatttatttaatgttatgtgagtactctgtcactatctt 262
Query: 61 cagacacactaaaagagggcatcaaatcccattacagatggttgtgagccaccatatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagacacactaaaagagggcatcaaatcccattacagatggttgtgagccaccatatggt 322
Query: 121 tgctgggaattgaactcaggacctctggaagagtagtcagtgcttctaacctctgagaca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 tgctgggaattgaactcaggacctctggaagagtagtcagtgcttctaacctttgagaca 382
Query: 181 tctctccagccctgagaattctttaaaaataaattattttagagaaaacctgctatgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctctccagccctgagaattctttaaaaataaattattttagagaaaacctgctatgata 442
Query: 241 aaaataatttgctagggtggggggaagggtattggggattttcggggtagcatttgaaat 300
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 443 aaaataatttgctagggtgggggga-gggtattggggattttcgggatagcatttgaaat 501
Query: 301 gtaagtgaagaaaatatctaataaaaaattgaaaaatatcatttgctattagtattcaaa 360
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 502 gtaaatgaagaaaatatctaataaaaa-ttgaaaaatatcatttgctattagtattcaaa 560
Query: 361 cacacacacatacacgaataatactgatcttatttctccagctggaatattagatgacaa 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 cacacaca--tacacgaataatactgatcttatttctccagctggaatattagatgacga 618
Query: 421 taaatatttcttttaattagaaatactaacctgacaagcattaatgaaaataatattatt 480
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 619 taaatatttcttttaattagaaatactaacctgacaaacattaatgaaaataatatcatt 678
Query: 481 atttctaaacaaaacatatgactgggttttttcacactgcttaaaatttatgaatgaaat 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ---tctaaacaaaacatatgactgggttttttcacactgcttaaaatttatgaatgaaat 735
Query: 541 gtagaaatgtctcacaagtttaag 564
||||||||||||||||||||||||
Sbjct: 736 gtagaaatgtctcacaagtttaag 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 959
Length adjustment: 10
Effective length of query: 554
Effective length of database: 949
Effective search space: 525746
Effective search space used: 525746
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_i23.g1 MSMg01no046_i23.g1 CHROMAT_FILE:
MSMg01no046_i23.g1 PHD_FILE: MSMg01no046_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:45 2005
(571 letters)
>mm_chr9_79365642_79366614
Length = 973
Score = 1046 bits (541), Expect = 0.0
Identities = 565/573 (98%), Gaps = 2/573 (0%)
Strand = Plus / Minus
Query: 1 agggcacttggtggctatttgtggaggcagtggtgcaggggaggtgaaagagggtgtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 agggcacttggtggctatttgtggaggcagtggtgcaggggaggtgaaagagggtgtcct 862
Query: 61 tgagaaacaggctctgtagccaggttgtccggacaagaatttctgatctgttattcttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgagaaacaggctctgtagccaggttgtccggacaagaatttctgatctgttattcttat 802
Query: 121 atttgtgactttgagtgccttgcttaactcatgcttggacatctttcttgttaaatgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttgtgactttgagtgccttgcttaactcatgcttggacatctttcttgttaaatgagg 742
Query: 181 cttgctaaagttttttcaatttgaacagtgtgtctctataatccagtgctaacaaagcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 cttgctaaagttttttcaatttgaacagtgtgtctctataatccagtgctaacaacgcta 682
Query: 241 ataaaaatattggttaaaatctgaggaaaactgtagaacaaaaccaccttccattgggaa 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaaaatattggctaaaatctgaggaaaactgtagaacaaaaccaccttccattgggaa 622
Query: 301 cagtttatttgttcttttagtgtctccttctaagtacacagtaggtgcctagtgtgctcc 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 cagtttatttgttcttttagtgtctccttctgagtacacagtaggtgcctagtgtgctcc 562
Query: 361 cagtaggtagacaatatttgatgcagattttcaagaacaacttaagtagtattgacttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtaggtagacaatatttgatgcagattttcaagaacaacttaagtagtattgacttca 502
Query: 421 gatttacagctttctctgcttccttttattcttttcttt-ctaaaatgcttaagcgtata 479
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 501 gatttacagctttctctgcttccttttattctttttttttctaaaatgcttaagcgtata 442
Query: 480 gagaaataaaaacagggatttgtgctccaagaaccaaacaaaaaatcccagataggtgtg 539
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gagaaatgaaaacagggatttgtgctccaagaaccaaacaaaaaatcccagaaaggtgtg 382
Query: 540 a-gagtcagggcttgataatgaaagctacaggt 571
| |||||||||||||||||||||||||||||||
Sbjct: 381 aagagtcagggcttgataatgaaagctacaggt 349
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 973
Length adjustment: 10
Effective length of query: 561
Effective length of database: 963
Effective search space: 540243
Effective search space used: 540243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
