BAC Information

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BAC

Clone NameMSMg01-046M20
Chromosome9 (Build37)
Map Location 22,174,983 - 22,175,487
singlet/doubletsinglet
Overlap geneAnln
Upstream geneIlf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603
Downstream gene9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805, Bmper
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046M20.T7 (MSMg01no046_m20.b1)MSMg01-046M20.TJ (MSMg01no046_m20.g1)
ACCAG277090AG277091
length681686
length of high quality
(start - end)		565 (43 - 607)526 (74 - 599)
definitionCHROMAT_FILE: MSMg01no046_m20.b1 PHD_FILE: MSMg01no046_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:02 2005CHROMAT_FILE: MSMg01no046_m20.g1 PHD_FILE: MSMg01no046_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAAAGCCGTTGCCTTATCAGAGTCGACAATGCATCTGGTTAATGTTTC
AGCTTTTAACTATGCTCTCTATAGAAAGGGGGGCAAGCAGGAGGCGCCGG
GCTGCCAGATGGTCAAAGAGTCAGCCAAGATCGTCAGAAGCAGTTCCTAT
TCCCTCCCTTTCTTTACGACCGGGAGACCTGGGAGACCTAGCTTCAAGAC
GGACTCGGGCATGCCCGGGCTAGTTTTCTTTGCAGTCTCAGTCCCAGGCC
TTTTTAGTTTAAACCTTTTATTTTATTTAATTTCCTTTCATTCCCCTCTT
CTTCTGAAGAATAAAGATAAAAAAATTACTGAACTCTCCCTCACCCCAGA
GCCCGACCCCTCCCATCTAGAGAGTGTTCCCAGAACACTCCTGAACTCTT
CACCCCAGAATGCATTCCTGAACTCCTCACCCTAGAGTTCAAACCCTCCC
AACTAAAGACTGTTCCAAGAACATTTTTGAGATAAGGGCCTCCTGGAACA
ACCTCAGAATGAACCGGGTACATTGCCAAATAATAGGATATGACCCCTTA
GTTACGTAGAATTCCCTTGGCAGAACCCCTTAGTTATGCAAACTTGTACT
TTCCCTGCCCCGTTCTCCCCCCTTGAGTTTT

CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTAAATTCAGGTAAATGCCAGTAT
TGGTGGGAAGGAGTTAGGAAGTAAGGAGTCTAGACAAAGGAAAGGCTGGT
AACTGATTGGTAGGCGAAAGGGAGGAGAATCCTTTGTGAGAAAGCAAGGT
GGGAACTGCAGGTCCTGACAGCTCTGGGGGCGGAGCCTGTCTGTCAACAC
TGTGTCCACTGCTGGGCACGAGAGGTGCTCACCTCTGCATGGAACATAGT
GGATGAAATACTTGGAAAGAGAGATGGCTAGCCTAGAAACAAGGGATCTA
GATGATAGAATAGAGATCAGTCGGGCTCTGTATTAGTTACTTTTCTGTTG
CTGTGATAAAACACCATGACAGAAAGCATCTTAAGGAAGAAAGGGTTGTT
TTGAAACAGTTCAATAGGACAAGTGAAATGAACAAACTGAAGTCATTGGG
AAGTGGTTGCAATGACGAGTTACGAAATCCACCTTGGATGGAGGGGTAAG
AAAATAGGTTAGAAACAAGGAAGAAAAGCATCAAAGAGGTAAGAGCAACC
ACTGGTGGGTGTGGTGCCAGGTAGAGGTTGGAGGCAGGTTGTTTTGTATG
TATTATTCTCATGGCTTTCCTTGTAAGCCTATCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_m20.g1 MSMg01no046_m20.g1 CHROMAT_FILE:
MSMg01no046_m20.g1 PHD_FILE: MSMg01no046_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:02 2005
         (526 letters)



>mm_chr9_22174983_22175908
          Length = 926

 Score =  961 bits (497), Expect = 0.0
 Identities = 503/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtaaattcaggtaaatgccagtattggtgggaaggagttaggaagtaaggagtctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 tttgtaaattcaggtaaatgccagtattggtgggaaggagttaggaagtaaggagtcaag 446

                                                                       
Query: 61  acaaaggaaaggctggtaactgattggtaggcgaaagggaggagaatcctttgtgagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaaaggaaaggctggtaactgattggtaggcgaaagggaggagaatcctttgtgagaaa 386

                                                                       
Query: 121 gcaaggtgggaactgcaggtcctgacagctctgggggcggagcctgtctgtcaacactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaaggtgggaactgcaggtcctgacagctctgggggcggagcctgtctgtcaacactgt 326

                                                                       
Query: 181 gtccactgctgggcacgagaggtgctcacctctgcatggaacatagtggatgaaatactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtccactgctgggcacgagaggtgctcacctctgcatggaacatagtggatgaaatactt 266

                                                                       
Query: 241 ggaaagagagatggctagcctagaaacaagggatctagatgatagaatagagatcagtcg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaaggagagatggctagcctagaaacaagggatctagatgatagaatagagatcagtcg 206

                                                                       
Query: 301 ggctctgtattagttacttttctgttgctgtgataaaacaccatgacagaaagcatctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggctctgtattagttacttttctgttgctgtgataaaacaccatgacagaaagcatctta 146

                                                                       
Query: 361 aggaagaaagggttgttttgaaacagttcaataggacaagtgaaatgaacaaactgaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aggaagaaagggttgttttgaaacagttcaataggacaagtgaaatgaacaaactgaagt 86

                                                                       
Query: 421 cattgggaagtggttgcaatgacgagttacgaaatccaccttggatggaggggtaagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  cattgggaagtggttgcaatgacgagttacgaaatccaccttggatggaggggtaagaaa 26

                                    
Query: 481 ataggttagaaacaaggaagaaaag 505
           |||||||||||||||||||||||||
Sbjct: 25  ataggttagaaacaaggaagaaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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