Query= MSMg01no046_p02.b1 MSMg01no046_p02.b1 CHROMAT_FILE:
MSMg01no046_p02.b1 PHD_FILE: MSMg01no046_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:12 2005
(518 letters)
>mm_chr9_111329317_111330234
Length = 918
Score = 949 bits (491), Expect = 0.0
Identities = 509/515 (98%)
Strand = Plus / Plus
Query: 4 ggaattcagtaagcatcgctttgcatcaaagagtatcttcctaggacagagtctcttagg 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtaagcatcgttttgcatcaaagagtatcttcctaggacagagtctcttagg 263
Query: 64 caattattaaggaatacttaagttttatagaaacttaaagctaagtacttctcaggcatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caattattaaggaatacttaagttttatagaaacttaaagctaagtacttctcaggcatg 323
Query: 124 atggccctgtgaggcagttccatgagtacccatcttgtgggtacccaccatcgccgctga 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtggccctgtgaggcagttccatgagtacccatcttgtgggtacccaccatcgccgctga 383
Query: 184 gcatgcgcgccaaagaggcctcatctctgtccctgtttgttcttactacgtcttatggtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcatgcgcgccaaagaggcctcatctctgtccctgtttgttcttactacgtcttatggtt 443
Query: 244 ctgatagtgcctgcaggtcactgtttctccattcgccattttgttagtcgctttccaaat 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 ctgatagtgcctgcaggtcactgtttctccatttgccattttgttagtcgctttccaaat 503
Query: 304 tctttgttttagcctttacttgttacataagaaagggctggactcaaactcatagagatc 363
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 tctttgttttagcctttacttgttacataagaaagggctagactcaaactcatagagatc 563
Query: 364 tgcctgcttcctaggattcaaggtgtgccctggctcagccagcaattgtttctttttaag 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 tgcctgcttcctaggattcaaggtgtgctctggctcagccagcaattgtttctttttaag 623
Query: 424 gtaagtttttgttattcttgatatgtgtgtatatacatcctgcacactatacattcacct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtaagtttttgttattcttgatatgtgtgtatatacatcctgcacactatacattcacct 683
Query: 484 ccctgatgggtgtcctcgcagctccttcctttagg 518
||||||||||||| |||||||||||||||||||||
Sbjct: 684 ccctgatgggtgtgctcgcagctccttcctttagg 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_p02.g1 MSMg01no046_p02.g1 CHROMAT_FILE:
MSMg01no046_p02.g1 PHD_FILE: MSMg01no046_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:12 2005
(405 letters)
>mm_chr9_111433211_111434017
Length = 807
Score = 669 bits (346), Expect = 0.0
Identities = 392/408 (96%), Gaps = 5/408 (1%)
Strand = Plus / Minus
Query: 1 tttgtttagatctgtaccccatttttaataaggctatttgattttctggagtccatcttc 60
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 619 tttgtttagatctgtaccccattttttatagggctatttgattttctggagtccatcttc 560
Query: 61 ttgagttctttatatatattggatatgagtccccataaataatctgtgagatgag--aaa 118
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 559 ttgagttctttatatatattggatatgagtccccataagtaatctgtgagatgagaaaaa 500
Query: 119 aaaaagaaagaaatgattgcattcatcaaaccaaaagtttcaagccaacctagtacattg 178
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 499 aaaaagaaagaaatgtttgcattcatcagaccaaaagtttcaagccaacctagtacattg 440
Query: 179 aacaatactcacatgtagcataaaattgaagggaaaaagtacaaaacattttcatagca- 237
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aacaattctcacatgtagcataaaattgaagggaaaaagtacaaaacattttcatagcag 380
Query: 238 aaaaattgacaataagtttctatttgacttttttggaagttctttttaattcctaaataa 297
||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 379 aaaaattgacaataagtttctatttaa-ttttttgaaagttctttttaattcctaaataa 321
Query: 298 attatgttgcaatcttctttgttattatttttttattttgagattataatgtgaccacac 357
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct: 320 attatgttgcaatcttctttgttatt-tttttttattttgaaattataatgtgatcacac 262
Query: 358 acttatctctttcgtttccttccttcaaaccttaacttttattaggaa 405
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 acttatctctttcgtttccttcctccaaaccttaacttttattaggaa 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 807
Length adjustment: 9
Effective length of query: 396
Effective length of database: 798
Effective search space: 316008
Effective search space used: 316008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
