Query= MSMg01no047_b12.b1 MSMg01no047_b12.b1 CHROMAT_FILE:
MSMg01no047_b12.b1 PHD_FILE: MSMg01no047_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:23 2005
(579 letters)
>mm_chr9_36765755_36766733
Length = 979
Score = 1069 bits (553), Expect = 0.0
Identities = 572/581 (98%), Gaps = 5/581 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaatgggaccagccactgtttacaaggtcagagacccccaggagaatggggat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggaattcaaatgggaccagccactgtttacaaggtcagagacccccaggagaatggggat 258
Query: 64 aatttgaaatcagttttacgggcatcacagtctacagggtgggaacaaggggagaagctg 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatttgaaatcagttttaggggcatcacagtctacagggtgggaacaaggggagaagctg 318
Query: 124 ggagaaccagggagaaccagggcagggcagggcagggcagggcagggcagggcaggg--- 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggagaaccagggagaaccagggcagggcagggcagggcagggcagggcagggcagggcag 378
Query: 181 --ttgttaaataggctcatggaactgccagtgaaactgatggctgaaattttcgggaatt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggttgttaaataggctcatggaactgccagtgaaactgatggctgaaattttcgggaatt 438
Query: 239 ttgtaaactggttgatgtctgggtgtcttaaaattggccacagtgagaggagcacttata 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgtaaactggttgatgtctgggtgtcttaaaattggccacagtgagaggagcacttata 498
Query: 299 gcaaaaaaattggtgaatggtgcaaatcaggactagaccctcctctccaacctatgtttg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcaaaaaaattggtgaatggtgcaaatcaggactagaccctcctctccaacctatgtttg 558
Query: 359 aagagcccattgttagttactaattagtacactaattccagggtccttcccaagagactt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagagcccattgttagttactaattagtacactaattccagggtccttcccaagagactt 618
Query: 419 ccacccactccgcttgctttgacatgagaagaaactaaccatacctatctacaagggcat 478
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccacccactctgctttctttgacatgagaagaaactaaccatacctatctacaagggcat 678
Query: 479 tcagtacattcacagctggtctcaaatgggctcctccagaccagggcatttcctttaagg 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 679 tcagtacattcacagctggtctcaaatgggctactccagaccagggcatttcctttaagg 738
Query: 539 aaaattctacctgtatggctcactgaggacaaggcagggga 579
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaaattctacctgtatggctcactgaggacaaggcagggga 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_b12.g1 MSMg01no047_b12.g1 CHROMAT_FILE:
MSMg01no047_b12.g1 PHD_FILE: MSMg01no047_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:23 2005
(515 letters)
>mm_chr9_36904425_36905340
Length = 916
Score = 822 bits (425), Expect = 0.0
Identities = 494/535 (92%), Gaps = 30/535 (5%)
Strand = Plus / Minus
Query: 1 tctgggtggggagtgaaatccccctgtgttgggtatgggggcgagagagcatggagttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tctgggtggggagtgaaatccccctgtgttgggtatgggggcgagagagcatggagttat 715
Query: 61 agatgagtcccaaagacagccccagtctgagatgggaagacaggaaagattcctattgga 120
||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 714 agatgagccccaaagacagccccagtctgagatgggaagacagg----------attgga 665
Query: 121 gacaggggcacctttctgtcacctgggcagtcacctctggagaatcaccagctgtggca- 179
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gacaggggcatctttctgtcacctgggcagtcacctctggagaatcaccagctgtggcat 605
Query: 180 ttttttccccagtcattccagaactggtcttgaccacaccccatttctctacccacagag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttttttccccagtcattccagaactggtcttgaccacaccccatttctctacccacagag 545
Query: 240 acagtgttcctgcagaggggatgttcctccaaagtttgttctgctggactctgcaccact 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 544 acagtgttcctgcagaggggatgttcctccaaagtttgttctgctggattctgtaccact 485
Query: 300 gaaggctctaggctccagcttgctagtgaagttcccacattccagaatagcctctcatgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaaggctctaggctccagcttgctagtgaagttcccacattccagaatagcctctcatgt 425
Query: 360 ctcatctatgtcccaaggaggtgttgacttccaggtgggatcttcaggaaattgaatcct 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctcatctatgtcccaaggaggtgttgacttccaggtgggatcttcaggaaattgaatccc 365
Query: 420 tgggagtacctacaggacagaagtagggaagaggcctaactggcctg------------- 466
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgggagtacctacaggacagaagtagggaagaggcctaactggcctgtggactgtgaacc 305
Query: 467 ------tggtggcctcatctctcccaggaaaaaaatcgacccagcagtaccttag 515
|||||||||||||| ||||||||||||| || ||| || |||||||||
Sbjct: 304 tggggctggtggcctcatctttcccaggaaaaaattctacctagtggtaccttag 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
