BAC Information

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BAC

Clone NameMSMg01-047C08
Chromosome9 (Build37)
Map Location 20,106,833 - 20,107,179
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873
Downstream geneOlfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047C08.T7 (MSMg01no047_c08.b1)MSMg01-047C08.TJ (MSMg01no047_c08.g1)
ACCAG277334AG277335
length696703
length of high quality
(start - end)
325 (46 - 370)469 (77 - 545)
definitionCHROMAT_FILE: MSMg01no047_c08.b1 PHD_FILE: MSMg01no047_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:26 2005CHROMAT_FILE: MSMg01no047_c08.g1 PHD_FILE: MSMg01no047_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTCCTTCTGTAGGTTTGCCTTGTCCAAGTTCAATGTGATAGGT
TCTGTTTAATGTTATTACATTTTATTTTGTTGTTATGTCTTAGAAACCTG
TTCTTTTTTTTTTCAGGATTCATTTGCTATTATACTTCCAAATCATAGTT
TATCACTAAGGGAAGTCAGGCAGAAATTCAAGCGGGAAACTGGAAGCAGT
AAGTGAAGTAGAGATCAGGAAGAACAATAAATACTTTCTAGTTCCAAGAG
AGAAGAATTATTATCAAATTAAATAAACTAAGCAGAATCAACACTCAGCA
GTAAAAATCAACCACCATAGCTTAGTGTCCATCATCTGGAATTCACTCAT
GATCTTTTGTCTCCAAATGTCTTGGACAACTCTATTTCTCTGGATTTGCT
ATTAGAAGCACACATAACTTATACCATAGGCTAGGCTAGTCCCATTTAAC
ACCTACCACTGCCCTTGATGTTCATTCCATGGTTCTTGAATCTACCATGT
ACTGGGGTCTCTTCTGCAATGGAAGTTGCACCTTCTTCAATGATCTTTTT
CTAGCCTCCCTTATAGACTCTAGTCCCTTATTGTTGTCCCATCTATAGGA
TTGCAGATCCTTTCAGTTCCTTGGGCACTTTTTCTAGTTCCTTCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGTTCACTGAGCTTTTATCAA
GTGGGAGTCTGTTCCATCATTCAGACAGAAGTGGGTAGTACATACAGGGT
AGATGGCTGTAGACCATAGGCTTAGTTCACAGACAGACACATGCATAATA
ACACATCAAATGTATCTTCTTGATCCCACTCTGGGGTATGCTTGCCGCTG
TCCACATCTTTCCTGCTCTTTTAGTATTTCAACTAGTCTGAACAGGATGC
CTGAAATAAGGATTTAGTTTTATTTCTTTTAAGGCACCAGGAAGAGTTTA
AAAATGTTCTTCCTCTCTTTTAGTATTCAAGATCTTGGGGTTTCTTAAAA
AGTTGGTAGTTAGGGTTTGGGTGCGAAAGACCCCCGAGCTGGGTAGTCAA
TCACTCTGAGGAGACCCTCCCAAGGATCAGCGAGACCACGATTCGGATGC
AAACAGCAAAAGGCTTTATTGGGAACACGGGTACCCGGGCGACTCAGTCT
ATCGGATGACTGGCGCCCCGAGTGTGGAGCTTTTACCCTTTTTATAGGTC
TAGGGTCAGGGCGTGCACTGCGTTGTCCTCAGAACTTAGACCCGCGCTGT
ATGCGTTATTTTATACTATTGTTCGGCCCTACCACCCCGTTCTTTTTGCC
CAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_c08.g1 MSMg01no047_c08.g1 CHROMAT_FILE:
MSMg01no047_c08.g1 PHD_FILE: MSMg01no047_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:27 2005
         (469 letters)



>mm_chr9_20106633_20107501
          Length = 869

 Score =  656 bits (339), Expect = 0.0
 Identities = 345/347 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgttcactgagcttttatcaagtgggagtctgttccatcattcagacagaagtgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgttcactgagcttttatcaagtgggagtctgttccatcattcagacagaagtgggt 260

                                                                       
Query: 61  agtacatacagggtagatggctgtagaccataggcttagttcacagacagacacatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtacatacagggtagatggctgtagaccataggcttagttcacagacagacacatgcat 320

                                                                       
Query: 121 aataacacatcaaatgtatcttcttgatcccactctggggtatgcttgccgctgtccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataacacatcaaatgtatcttcttgatcccactctggggtatgcttgccgctgtccaca 380

                                                                       
Query: 181 tctttcctgctcttttagtatttcaactagtctgaacaggatgcctgaaataaggattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttcctgctcttttagtatttcaactagtctgaacaggatgcctgaaataaggattta 440

                                                                       
Query: 241 gttttatttcttttaaggcaccaggaagagtttaaaaatgttcttcctctcttttagtat 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gttttatttcttttaaggcaccaggaagagtttaaagatgttcttcctctcttttagtat 500

                                                          
Query: 301 tcaagatcttggggtttcttaaaaagttggtagttagggtttgggtg 347
           || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgagatcttggggtttcttaaaaagttggtagttagggtttgggtg 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)