BAC Information

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BAC

Clone NameMSMg01-047K01
Chromosome9 (Build37)
Map Location 63,820,500 - 63,820,974
singlet/doubletsinglet
Overlap geneSmad6
Upstream genePias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
Downstream gene2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047K01.T7 (MSMg01no047_k01.b1)MSMg01-047K01.TJ (MSMg01no047_k01.g1)
ACCAG277628AG277629
length699768
length of high quality
(start - end)		481 (45 - 525)46 (76 - 121)
definitionCHROMAT_FILE: MSMg01no047_k01.b1 PHD_FILE: MSMg01no047_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:00 2005CHROMAT_FILE: MSMg01no047_k01.g1 PHD_FILE: MSMg01no047_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGCAGTGTTCACACTCAGGGCAGGACAGGCCCCTCGGGGCCCGG
AACTACTGTGGCCTTGCTTGCTCTCCAGCCATGTGGGCAGTGCCTCCTAC
AGCTGAGAGACATGGCCAGGACCCAGAGACCTGCCCTGACTTCTCTAGCC
ATCTCCTGGGGTCTCAGCAGACTCTCCATTTCGGTCTTTACATTGCTGGG
ATACATGGATATCACCTAAGCTTCGAAGATGAGCTCTACCTTCCTAAAGA
AAAGTCCTGATGGGTGTCCCCAGGAGCAACAGGAGGGGACAGCAGGTCCA
CCAGCCCGGTCCTGTCTCTGGGCTTCTGTCTGTTCCACAGGCAGTCTGTC
CATTCCCTCGGTGTCCAAGGCCTCTGCCCTTCTGGCAGCTCCTAACTAGA
GCAAGGGTAGCTAACGGATTCCCCGAGGAAAGGGCATTTCCCACTGTGTG
TGCCAAGCATACCAGGGCTACTGTCACCCCCAGACCTAGACTCGCTACTT
CTCAGCTAGGTGCACACCTCTCTTCTTCCTGGGCTCTAACACGTTATGGC
GTCCCCGTGTTTTGAGCTCACAAAGGTAATCCCCTAGCCATCTCCTGGGG
TTTCAGCAGCCTCCTCCATTTGCATCTTGACATTGCTGGGATACCCGGN

CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGGTTGGCATATTTCTCCGTACT
CGTCGCTGTGGGCCATTCAGATGCCCCCTGGGGTGGCAGGTCTTCCCCCT
TTTCCCCCCCCCTTCTCCCCCCCCTCCCCCTTTCCCCCCCCTCTCCCCTC
TCTTTTTCTCTCCCTTCTTTCTCCCCCCCCCCCCCCCTCTCCTCTCTCCC
CCCCTCCCCCTTTTCCTCTCTCCTTCCTCCTCCTCCCTTCCTCCCCTCCT
TTCCCCCTTTTTCTCCCCTCCCCCCCCCCCTCCTCTTTCTTTCCTTTTTC
TCCCCTCTTCCCTTTTCTTCTTTTTCCCTCCCCCCTCCCCCCCTTTCCCT
TTCCCGCTTTCTTCCTTTCTTTCTTCCCTTCTCTTCTCCCCCTCCTCTTT
CTCCTCCCTCTCTCCCTTCCCCCCCTTTTCCTCCCCTCCCCCCTTTTCTT
CCCCCCCCCACTTTCTTTCTTTTTTTTTTTCCTCCCTTTCCTCTCCCTCT
CCTCCCCTCTTCTTTCCCTCCTTTTTTCCCTCCTTCTTTTCTCCCCTCTC
TTTCTCCCCCTCTCCCTCCCCCCCCCCTATTTTCTTCTCCTCCCCCCCCT
CTTTACCCTCTTTTCTCTCCCCCCTCTTCTCTCCTTTTTTCTCTTTTTTT
TCCTTTCTCTCCCCCCCTTCTTCCCTCTTCTTTTTTCCTTCTTTTTCTCC
CCTTCTTTCCCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_k01.b1 MSMg01no047_k01.b1 CHROMAT_FILE:
MSMg01no047_k01.b1 PHD_FILE: MSMg01no047_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:00 2005
         (481 letters)



>mm_chr9_63820296_63821176
          Length = 881

 Score =  841 bits (435), Expect = 0.0
 Identities = 465/475 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatggcagtgttcacactcagggcaggacaggcccctcggggcccggaactactg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcatggcagtgttcacactcagggcaggacaggcccctcggggcccggagctactg 264

                                                                       
Query: 65  tggccttgcttgctctccagccatgtgggcagtgcctcctacagctgagagacatggcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 tggccttgcttgctctccagccatgtgggcagtgcctcctacagctgagggacatggcca 324

                                                                       
Query: 125 ggacccagagacctgccctgacttctctagccatctcctggggtctcagcagactctcca 184
           |||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 325 ggacccagaggcctgccctgacttctctagccatctcctggggtttcggcagactctcca 384

                                                                       
Query: 185 tttcggtctttacattgctgggatacatggatatcacctaagcttcgaagatgagctcta 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcggtctttacattgctgggatacatggatatcacctaagcttcgaagatgagctcta 444

                                                                       
Query: 245 ccttcctaaagaaaagtcctgatgggtgtccccaggagcaacaggaggggacagcaggtc 304
           ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 ccttcataaagaagagtcctgatgggtgtccccaggagcaacaggagggggcagcaggtc 504

                                                                       
Query: 305 caccagcccggtcctgtctctgggcttctgtctgttccacaggcagtctgtccattccct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caccagcccggtcctgtctctgggcttctgtctgttccacaggcagtctgtccattccct 564

                                                                       
Query: 365 cggtgtccaaggcctctgcccttctggcagctcctaactagagcaagggtagctaacgga 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cggcgtccaaggcctctgcccttctggcagctcctaactagagcaagggtagctaacgga 624

                                                                  
Query: 425 ttccccgaggaaagggcatttcccactgtgtgtgccaagcataccagggctactg 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttccccgaggaaagggcatttcccactgtgtgtgccaagcataccagggctactg 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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