Query= MSMg01no047_l07.b1 MSMg01no047_l07.b1 CHROMAT_FILE:
MSMg01no047_l07.b1 PHD_FILE: MSMg01no047_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:06 2005
(527 letters)
>mm_chr9_52921882_52922808
Length = 927
Score = 946 bits (489), Expect = 0.0
Identities = 521/543 (95%), Gaps = 21/543 (3%)
Strand = Plus / Plus
Query: 5 gaattcaaatatttaaaggccttaatattcatgtcattagtactgacagtgagaacagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatatttaaaggccttaatattcatgtcattagtactgacagtgagaacagaa 264
Query: 65 actggagctgcaagtgttatcttttatagataatcatgtaaagtcaagtctttctgaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actggagctgcaagtgttatcttttatagataatcatgtaaagtcaagtctttctgaaag 324
Query: 125 ataattaaaagcataaaactattataaaaatcaatatgagactattagagaacaaaccgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataattaaaagcataaaactattataaaaatcaatatgagactattagagaacaaaccgc 384
Query: 185 attagctgtagtaggaagtagtaagtgctactatgtggtaacaatgacagaaacatgtaa 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attagctgtagtaggaagtaggaagtgctactatgtggtaacaatgacagaaacatgtaa 444
Query: 245 tacaatgccttgtgaatgatgacttagaaactgaacctagatcacatattttagtggtac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacaatgccttgtgaatgatgacttagaaactgaacctagatcacatattttagtggtac 504
Query: 305 aaacatgcatataatttttaaaatcctaataaaattatttctacccagggtgtttcttag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaacatgcatataatttttaaaatcctaataaaattatttctacccagggtgtttcttag 564
Query: 365 aatgtctaaaaaaa-ttagcaaaatataagatacaaaaggtcagaatcagatacagaagg 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgtctaaaaaaaattagcaaaatataagatacaaaaggtcagaatcagatacagaagg 624
Query: 424 attgctgatactttaaaggtttgttctacctgttaaagcagtatcatgcataacaaacaa 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 attgctgatactttaaaggtttgttctacctgttaaagcagtatcatgca-aacaaacaa 683
Query: 484 actat------------------aagaa-ccaaatgatatgctcctacagagttaaatta 524
||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 684 actatggctgcagaacaaactataagaaaccaaatgatatgctcctacagagttaaatta 743
Query: 525 tac 527
|||
Sbjct: 744 tac 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_l07.g1 MSMg01no047_l07.g1 CHROMAT_FILE:
MSMg01no047_l07.g1 PHD_FILE: MSMg01no047_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:06 2005
(477 letters)
>mm_chr9_52926793_52927669
Length = 877
Score = 861 bits (445), Expect = 0.0
Identities = 469/477 (98%)
Strand = Plus / Minus
Query: 1 atttgtcattgtcataaatggagggtagtacagaacaggcagtatggtggctatgatctg 60
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 677 atttgtcattgtcataaatggagggtagtacagaacaggcactatggtgggtatgatctg 618
Query: 61 actggccagaaaataagtaagacctaagtattgattattacaaatctaaataataccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 actggccagaaaataagtaagacctaagtattgattattacaaatctaaataataccatt 558
Query: 121 tgacagtaaaattttattctgaattaccattttcttataaatatttacattggaatatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgacagtaaaattttattctgaattaccattttcttataaatatttacattggaatatca 498
Query: 181 agtgaggtcttattaccacagcttacctactaatatattcctgttttattaaattaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agtgaggtcttattaccacagcttacctactaatatattcctgttttattaaattaagat 438
Query: 241 aatcaatgctaaaaagccatgctaagtgatagatgttatgtagttgaactaaataactta 300
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct: 437 aatcaatgctaaaaagccatactaaatgatagatgttatgtagttgaacaaaataactta 378
Query: 301 tttgaactcttaagattatagataactctcaaagccaaaagaacagctagaaattataga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 377 tttgaactcttaagattatagataactctcaaagccaaaagaacagctagaaattagaga 318
Query: 361 aacccccagaagacagttgaggaggtaggaccaactgcctaaatatttggttaagttcca 420
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aacccccaggagccagttgaggaggtaggaccaactgcctaaatatttggttaagttcca 258
Query: 421 cattttacagactcaagcaggacccttagaaaactttactttaaaagcactacttag 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cattttacagactcaagcaggacccttagaaaactttactttaaaagcactacttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
