Query= MSMg01no047_p03.b1 MSMg01no047_p03.b1 CHROMAT_FILE:
MSMg01no047_p03.b1 PHD_FILE: MSMg01no047_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:22 2005
(509 letters)
>mm_chr9_42203390_42204302
Length = 913
Score = 905 bits (468), Expect = 0.0
Identities = 498/510 (97%), Gaps = 6/510 (1%)
Strand = Plus / Plus
Query: 5 gaattctacgatttgctgagacagtaatggcagcttttcttaagactcctttctttccta 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacgatttgctgagacagtcatggcagcttttcttaagactcctttctttccta 264
Query: 65 tcacatagcagaagtcatcagagcccaagaggagtaactgaaccaatacaacgggaggag 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 tcacatagcagaagtcatcagagcccaagaggagtaactgaaccaagacaacgggaggag 324
Query: 125 agggttggtaggaactgtctgtgagtgaccttgactaagatcagcccatggagttctgtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggttggtaggaactgtctgtgagtgaccttgactaagatcagcccatggagttctgtc 384
Query: 185 cagctctattcacaaaaaacagcaaacagtgg-atcctggaggcagcagagggaggtgcc 243
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 385 cagctctattcacaaaaaacagcaaaca-tgggatcctggaggcagcagagggaggtgcc 443
Query: 244 tgtgtgcatgtgtgcatgcatgtgtgggtgcatgtgtatgtgtgtgttagtgagtgagca 303
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 tgtgtgcatgtgtgaatgcatgtgtgggtgcatgtgtatgtgtgtgttagtgagtgtgca 503
Query: 304 tgcatgcatacatgcacggaggggtttggagtgctggagtactctgtagggcagacagtg 363
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 tgcatgcgtacatgcacggaggggtttgcagtgctggagtactctgtagggcagacagtg 563
Query: 364 ttcttcctggtcctcatagtcaaaggt----cattacacagaccccacctggggcagcag 419
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 564 ttcttcctggtcctcatagtcaaaggtgagtcattacacagaccccacctggggcagcag 623
Query: 420 cacttcctccctggatgcttggagcacagactctggagtttcccacgaaaactcttgcaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cacttcctccctggatgcttggagcacagactctggagtttcccacgaaaactcttgcaa 683
Query: 480 ggtgtggctccgactggtgggaaaaataaa 509
||||||||||||||||||||||||||||||
Sbjct: 684 ggtgtggctccgactggtgggaaaaataaa 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 913
Length adjustment: 10
Effective length of query: 499
Effective length of database: 903
Effective search space: 450597
Effective search space used: 450597
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_p03.g1 MSMg01no047_p03.g1 CHROMAT_FILE:
MSMg01no047_p03.g1 PHD_FILE: MSMg01no047_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:22 2005
(633 letters)
>mm_chr9_42338121_42339153
Length = 1033
Score = 1193 bits (617), Expect = 0.0
Identities = 629/633 (99%)
Strand = Plus / Minus
Query: 1 agttaaaggttgggagcttcttctactggaatctcagaaatgattcttacctaggctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 833 agttaaaggttgggagcttcttctactggaatctcagaaatgattcttagctaggctgaa 774
Query: 61 aggaaggaggggcaggtgggtgatttgagtctcttcactgcggtatctcctgatgacgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aggaaggaggggcaggtgggtgatttgagtctcttcactgcggtatctcctgatgacgtc 714
Query: 121 tgctccccagtcacattccagagacaaagaaaatgatgcatttcatttgggagctagtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgctccccagtcacattccagagacaaagaaaatgatgcatttcatttgggagctagtat 654
Query: 181 ttgtatttgtgggcaatctgtgagtgacaccagagctagtattccaccaaccggggattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttgtatttgtgggcaatctgtgagtgacaccagagctagtattccaccaaccggggattt 594
Query: 241 gcgaggagactctgaatctatttgagctaatgtgtgctgattgctgaaacacagctgagg 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 593 gcgaggagactctgaatctatttgagctaatgtgtactgattgctgaaacacagctgagg 534
Query: 301 ctccggctccgggtgtcaggaggaaaccccagttttaaagccatctgtctaggtggctta 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 533 ctccggctccgggtgtcaggaggaaagcccagttttaaagccatctgtctaggtggctta 474
Query: 361 tgcactgtcctgtgtactggagggggcagaaatagtgactagatgatttcctagtccctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgcactgtcctgtgtactggagggggcagaaatagtgactagatgatttcctagtccctc 414
Query: 421 ttgcaggtgctaaggcatctggaagggcggccaggatcttgcaggctggagcaaacccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttgcaggtgctaaggcatctggaagggcggccaggatcttgcaggctggagcaaacccct 354
Query: 481 tcccagccccagctgatgaatggctgtgtgctgtggaaggcattagacttctagggggat 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 353 tcccagccccagctgatgaatggctgtgttctgtggaaggcattagacttctagggggat 294
Query: 541 gactgatgacagtgttaagcagaatggcccagctctctgaatgtgcccctcccccctcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gactgatgacagtgttaagcagaatggcccagctctctgaatgtgcccctcccccctcca 234
Query: 601 tctgtttctcagctctcactctgccagcaatct 633
|||||||||||||||||||||||||||||||||
Sbjct: 233 tctgtttctcagctctcactctgccagcaatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
