Query= MSMg01no047_p04.b1 MSMg01no047_p04.b1 CHROMAT_FILE:
MSMg01no047_p04.b1 PHD_FILE: MSMg01no047_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:23 2005
(576 letters)
>mm_chr9_117381860_117382835
Length = 976
Score = 1093 bits (565), Expect = 0.0
Identities = 571/573 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaaatactacttttattgtatctttggagccacttctccactgatcaaaaaggg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaattcaaatactacttttattgtatctttggagccacttctccactgatcaaaaaggg 717
Query: 64 ccgacgaagaggcccacgcatctgattcttgcacaggcaacctgtgtgtttacttggaat 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ctgacgaagaggcccacgcatctgattcttgcacaggcaacctgtgtgtttacttggaat 657
Query: 124 tccttttcttcaaagatctttttaggatgtctttgaagtttcaagttaatgagaattttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tccttttcttcaaagatctttttaggatgtctttgaagtttcaagttaatgagaattttt 597
Query: 184 ccaagtctaggatttgggttttcatcttcctggcactccttaagccccttaaacttaaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccaagtctaggatttgggttttcatcttcctggcactccttaagccccttaaacttaaaa 537
Query: 244 gcacacttctgcctacatgtcttttcttctctctgtctcatagatttttctctcatgtgt 303
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 536 gcacacttctgcctacatgtcttttcttctctctgtttcatagatttttctctcatgtgt 477
Query: 304 ttacttttgagccaagtagttaaggatggaggctctacccttggctcagtcagcatggag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttacttttgagccaagtagttaaggatggaggctctacccttggctcagtcagcatggag 417
Query: 364 agtctattggaatctgagacatgttcacagtctgtgctgcctccttccaaaggccataat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agtctattggaatctgagacatgttcacagtctgtgctgcctccttccaaaggccataat 357
Query: 424 taattaaaactctatttgaaaacagagatgtgtgttttacatgttggcagactgtagctc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 taattaaaactctatttgaaaacagagatgtgtgttttacatgttggcagactgtagctc 297
Query: 484 aaacacacacaattggaggcttgacctacggggccatactgtcgggagatggcggagtct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaacacacacaattggaggcttgacctacggggccatactgtcgggagatggcggagtct 237
Query: 544 ttgtgaagtgaagcctcatggaggttcttagat 576
|||||||||||||||||||||||||||||||||
Sbjct: 236 ttgtgaagtgaagcctcatggaggttcttagat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_p04.g1 MSMg01no047_p04.g1 CHROMAT_FILE:
MSMg01no047_p04.g1 PHD_FILE: MSMg01no047_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:23 2005
(610 letters)
>mm_chr9_117230214_117231220
Length = 1007
Score = 1089 bits (563), Expect = 0.0
Identities = 597/609 (98%), Gaps = 3/609 (0%)
Strand = Plus / Plus
Query: 2 atgaaggctgagagagaaaaacagtttccagcctcaaacaagggagacgccagataagct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atgaaggctgagagagaaaaacagtttccagcctcaaacaagggagacgccagataagct 261
Query: 62 aaatcttaaaacaaactcaccccaagtttatatcaataggcgcccaggaaggaggctgtt 121
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 262 aaatcttaaaacaaactcaccccaagtttataccaataggcgtccaggaaggaggctgtt 321
Query: 122 tattctggaggggggaaatcccaccccatttagtcatgtgaagttcatggatgttcagtc 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tattctggaggggggaattcccaccccatttagtcatgtgaagttcatggatgttcagtc 381
Query: 182 tcagaacatttgttgacgatgataaaaaaaatgctagaaattttattcttagagatgcat 241
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 382 tcagaacatttgttgacgatgataaaaaaa-tgctagaaattttattcttagagatgcat 440
Query: 242 agtctatgcaccatctactacacccctcacatagagctctggtcaggaggtgagggggcc 301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtctatgcaccatctactatacccctcacatagagctctggtcaggaggtgagggggcc 500
Query: 302 ctctggacaccctgtatctctctctgtaataattcagagtttaaattctgaaagaaatga 361
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctggacacactgtatctctctctgtaataattcagagtttaaattctgaaagaaatga 560
Query: 362 atggatgcatggcatttttgttagttctttctctctacttgccttttaggtcacctcttt 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 atggatgcatggcatttttgttagttctttctctctacttgccttttaggtcacttcttt 620
Query: 422 gcatattagttggtattgcttaaagattcccaaagtcctggcatatattaactaaggaaa 481
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgtattagttggtattgcttaaagattcccaaagtcctggcatatattaactaaggaaa 680
Query: 482 taacattttagacatttcaaacgggttgataatgtatgtgtatgcaatgtttctcttatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacattttagacatttcaaacgggttgataatgtatgtgtatgcaatgtttctcttatt 740
Query: 542 tttatttattatgtgtatgtgtacatgaatgagcttgtgtgtgtgtgtgcgcgcacacat 601
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct: 741 tttatttattatgtgtatgtgtacatgaatgagcttgtgtgtgtgtgcgcgcgcgca--t 798
Query: 602 gcccagagg 610
|||||||||
Sbjct: 799 gcccagagg 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1007
Length adjustment: 10
Effective length of query: 600
Effective length of database: 997
Effective search space: 598200
Effective search space used: 598200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
