BAC Information

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BAC

Clone NameMSMg01-048F23
Chromosome9 (Build37)
Map Location 53,131,163 - 53,131,578
singlet/doubletsinglet
Overlap geneExph5
Upstream geneLOC100042876, AI593442, Gm1715, Ddx10
Downstream geneKdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048F23.T7 (MSMg01no048_f23.b1)MSMg01-048F23.TJ (MSMg01no048_f23.g1)
ACCAG278156AG278157
length1,1711,245
length of high quality
(start - end)
425 (71 - 495)353 (79 - 431)
definitionCHROMAT_FILE: MSMg01no048_f23.b1 PHD_FILE: MSMg01no048_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:13 2005CHROMAT_FILE: MSMg01no048_f23.g1 PHD_FILE: MSMg01no048_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTTTTG
TTCATGACCCCCCTTAAAGCTGGCACCTAGCTAAAGTTTTTAAAAATGTC
TTTTCGGCTAGGGAGAAAAGCCATTTCAACCACAATGAGCTTTAACATTC
CTAATGATGGTACGAAGACACTGAGAAATTGAATATCTATTGGTGGATAA
AGATGGGTATAGCCTGTCGTGTATAGTAGAAAGCCAAGACTCTTGATTTA
GGGTCACAAAGGAGGGTACGATTCATTCTTGCTAATATGAAGATGGTCCT
TTCAAGGCAGAAGCAGTCTTACTGGGGTCTGAACTCAGTTAGAGGAAGCA
TCTGAAGCTGCTTGTGGTTGTGTGGTTGCCAGCCATGATATTCACTCACA
GTGATTGCAAAGTATTTTAGTTGTCCTGTCAACCACTCGCTCATAGGAGA
TCCCCAGCATTCTGGGAAATTGCTTTCTGGAGCAACCGAGTCAACAGAAA
GCCAGACATTGGAGAAAGATGCTACAAAACCTCTAACATGTGGGAAGTGT
GTCAGAGGTTACTGAATTTCTATTTAAAATTTACAGAGTTGAAACAAAAA
AAATGAAACAATCCACTCATTCTTTATGTGTCAACTGGTTGGAAATTAGT
GAACATTTAATAATAGTCACCGAAGGTGGGTGGGATACAGGTAAGCCAGG
AGGAGAGAGAGAGTCAGGCACGTCATAGGCTCTGGAGAGGAGGAGACAGC
AGTTCTCCCAGAGCAAGCACTAAGTCTTTCGTTTAGGGTTTCAATTTCTG
ATAGGAACATGAATGGTTTTTCTGAAGTGAACATTACATATTCCTACTAT
GAATTATATTTTGATAAGTGTGAAATTTCTATCCGTTGTAATAGCACCAG
CCCATAATTAGTAATCTTTTTCTCCTGGCCACATTCCTACTTATTCCCCC
CCAAATTTGAACCCGCTATGGCTGGCCCTCTTCTGTCAAGAATTTTTTTT
ATTAACCTTAATTTCCATCCCCGTTTTCTTTGGTTTTCCAGGGTCCTGCA
TTCACCCCGGGTTCTGTACCTATTCCTCCAGTCTTTGTACCATTTTCAAT
CCCCATTATAAATTGTTTCAGAAAGTTTATATTTCATTTTCTTTACATTG
TTTTATAAATTTCTCTCCTTG
AAACATAGGTAGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCACCTTTATAGCGGCTGTGGTAAGCTACGCAGGACCAAG
CTAGCCCGTACACTCAACATTCCAATAGGCAGCACTAACTGGACTCAATA
GATTTGAAGAAGAAAAAAAAAATAGAGGATATGGAGGTGAAAAGGAGGTG
TTGGAGAGGCTCCTGGGATAGTTAGTAATAGATAAGATCAAGATGCACTG
TCAACAACTACATAAAAGACGTTTTTAAGCCACTGTGGGTCTGTAATTCA
GCCCTGGGGAAGCTGATAAAAGCCAGTTTACCAGAATCAGTGAGCAACAA
GTTTGATAAGAGACCCTGTCTCACAAATCGGGTAGGGAGTGATAGAGGAA
ATCTATGGTCTACACACACACACACACACTCACACACACACACACACACA
CACACACCCACACGAGAACATAAAACTATATATTAAGTCTATTTTTTATG
TGAACTCTCGAAGACCTATAGAAGACCTATCGTGTATGCCTTTGAGATGT
AACAACAGCAATGATTAATACAAAGGTAACAAATGCAGCAGATACCTTGC
CGTATTGAATTAAGTCTAATGGATTAGAAAAAGATTATTGGCAAGCACTA
AAAAAAATCATTTATTAGGAAAACAAAGTTCAGAGGATCCGGAAGTAAAC
TTTGTAGGAGACGCTGAGAGAACACAGGTCTCTTAATACTGAATCCCCAG
AATAACTCTCAATTTTCATGGCTATTCCTGGAAACAACGCTTTTGTTTGT
CTGCTAAGCTGTACTATAATAACAGGCTGATGGTCTGATTCCTAACAGGT
TTATTTTGAAGTTGAAAATATTTCAATGGTTGCCATTCCGTATTTCATGG
AAGGAACTGAATAAACATCCCAATTTCTCCCTTGTTCATTACAAATATTG
GTTTTTTGGTCCATATTTTAAGAAAGGGTGAAATACTTGGGGGCCCCCTT
GTTCTTTTCCATTTAATATCCTATACCCCTGTCCGGTTTAAAATACTCCT
GTTCCGCTAAATAGGCTACGGTTATTTTCTTTCTTAAGTGAAAAATCTAT
ATTTCCCCAATAATAATATTCCCTATGGGTTCCTCTCTCTCTCCCTTTTC
CGTGGTAATATGCGCCTTCCCTGGGATACACTCTTTTGTGTGTTTTCTAC
ATCTCCGCGCCTAAATTGGTAATAACTCTCGTACTTTTGCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_f23.b1 MSMg01no048_f23.b1 CHROMAT_FILE:
MSMg01no048_f23.b1 PHD_FILE: MSMg01no048_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:13 2005
         (425 letters)



>mm_chr9_53131079_53131903
          Length = 825

 Score =  687 bits (355), Expect = 0.0
 Identities = 404/425 (95%), Gaps = 9/425 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcacctagctaaagtttttaaaaatgtcttttcggctagggagaaaagccatttcaac 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 500 tggcacctagctaaagtttttaaaaatgtcttttcagctagggagaaaagccatttcaac 441

                                                                       
Query: 61  cacaatgagctttaacattcctaatgatggtacgaagacactgagaaattgaatatctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cacaatgagctttaacattcctaatgatggtacgaagacactgagaaattgaatatctat 381

                                                                       
Query: 121 tggtggataaagatgggtatagcctgtcgtgtatagtagaaagccaagactcttgattta 180
           ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct: 380 tggtggataaagatgggtataacctgtcatgtataggagaaagccaagactcttgattta 321

                                                                       
Query: 181 gggtcacaaaggagggtacgattcattcttgctaatatgaagatggtcctttcaaggcag 240
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggtcacaaaggaggataggattcattcttgctaatatgaagatggtcctttcaaggcag 261

                                                                       
Query: 241 aagcagtcttactggggtctgaactcagttagaggaagcatctgaagctgcttgtggttg 300
           ||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 260 aagcagtcttactggtgtctgaactcagttagaggaagcatctgaaactgcctgtggttg 201

                                                                       
Query: 301 tgtggttgccagccatgatattcactcacagtgattgcaaagtattttagttgtcctgtc 360
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 --------ccagccatgatattcactcacagtgattgcaaagtattttagttgtcctgtc 149

                                                                       
Query: 361 aaccactcgctcataggagatccccagcattctgggaaattgctttctggagcaaccgag 420
           |||||||| |||||||||||||||||||||||||  |||||||||||||||||||| |||
Sbjct: 148 aaccactcactcataggagatccccagcattctga-aaattgctttctggagcaactgag 90

                
Query: 421 tcaac 425
           |||||
Sbjct: 89  tcaac 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)