BAC Information

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BAC

Clone NameMSMg01-048L20
Chromosome9 (Build37)
Map Location 30,231,419 - 30,232,121
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt
Downstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048L20.T7 (MSMg01no048_l20.b1)MSMg01-048L20.TJ (MSMg01no048_l20.g1)
ACCAG278428AG278429
length1,2271,225
length of high quality
(start - end)		689 (85 - 773)796 (79 - 874)
definitionCHROMAT_FILE: MSMg01no048_l20.b1 PHD_FILE: MSMg01no048_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:01 2005CHROMAT_FILE: MSMg01no048_l20.g1 PHD_FILE: MSMg01no048_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTATTTTTNNNACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTAAGAATTTCATGAATCCTTTGATTTTAATAGCTGAGTAG
TACTCTAGTGTGTAAATGTACCACATTTTCTGCATCCATTCCTCTGTTGA
AGGACCGAAGGCTCTTTCCAGCTCTTGGCTATTATAAATAAGGCTGCTAT
GAACATAGTGGATCATGTGTCCTTATTACATGTAGGAGCATCTTCTGGGT
ATATAACCAGGAGTGGTATAACTGAGTCCTCAGGTAGTACTATGCCCAAT
TTTCTGAAGAACCACCAAAGCTATCTCCAGAGTAGTTGTACCAGTTTGCA
ATCCCACCAGCAACAGAGGAGTGTTCCTCTCTCTCCACATCCTCGCCAGC
ATCTGCTGTCACTTAAAAAGCTAAAAGTATAGTCACTATATGACCCAACT
ATACGACTACTTTGCATGTGCCTAAGGGACTTGCCATCCTACTCTACAAA
TGTGTTCTCAGACCTTCAACTGATATGTGGAACAATGTAGTTCATAAACA
CAATAGAATTATATTCATCTGTAAGTAAAATGAAGTCATAAAGTTTTCAG
GTAAATGGACAAAACTAAAATAGTATACTTAGTGAGATAACCCAGACCCA
GAGAGATAAACACTGAAGTGTTTTCTTTGTAAATAGCTCCAAATGTTTAG
GTTTGAGTATATAACCTGTGGTAACTTAGAAGCCAGGAAGTAGAAAGGGA
CCATAGGAGTCAGGAGGAGCTGTAGAAGGGGAACAGTTGCATATAAGTGA
TATAAAAGGAGAACTTCTGTGAGGCAGGGCTTTTAACTGGGGAGGAAAGA
GTTAGATTAATGGTTGATAATGTTTAATATACATATATCTTTAAAGATGC
TTGTTTAACTTTTTGTATTATTTAAACTTTTATTCTTTTTTCTTTATTTT
CTTTCATTCTTTTTCTCCATTGTTTACTCTTATTATTGTTTTATTTCTCC
TTCTCTCTGGTTTATTAATAATTTTTTTCCATTTACTTTTTGTATTCCTC
TTTTTCCTCCCTTTTTACCTCTTTTTTATATTATATTTTTCTTTTTCTTC
ATTCTTTTTCTCTTCTTTTGTTAATCTTCATTCTTTTCCTATATTTTTTT
CTTTTTCTATTTTTCTCTCTTTTTTTCTTTGTTTCTCTTCTTCTTATATT
TATTTTATTTCTTTTTCTTTTTTCTCC

NNCCCTTTATTTTTTTTAGCATGGAGNCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTCACTGGTGCTGGAAA
CAAAAACAGGAACCAAAACACATCCACGAGGCCAGGGAGAGAACTCTGAC
GATGCTGAAGGTGAGCCGAGACAGGGCATGGGGTAGAGTTGTTGCTGGAA
AACAGGAAGTAATGGAATTCACACAAAAGACAGAGGCTTAGAGGAGCTAG
CCAAGGTCAGCAGCATGAGTCTCTCATGGAATTAATGTATGTTGTTCAGT
TGTTCTCTCCTCAGATGCTTTGCCCCTCAGCGTAGGAGAGAAGCAAACAG
GATTGGAGCATGTAGCAATGTTTAGAATAGATAGAGAGAAATGGCAAAGA
GTCAGGCCCGTAACACCCCGAGAAGTGAGGTGCTAAAACTTAAAACTATG
CTGTCTAGGTACACGGGCAATGAAAGAGAGCCAGGAGAGGGACAGTCGGC
TGTGAGAACGTACTCAAGTGTAATAGGAGTAGTATATGTGCAAACCAGAA
AAAGGCTCATGGGAAACTAGAGATCAGTCCAAGGGGGAGTTTCTGATTGC
TGATCTGTCAAGCTGCCATGAGCCTTGCCACTCACATCGACACCATTTAT
CCTCTTACAGTTTGGGGAGTTAGCAGTCTCAAATGGATTGGCAGAAGTGT
GCTCACCCAGGAGGCTAGAAAAAAGATTGTGCTTTCCAGTTCTTTGCAGT
GTCCAGGGGACACCTGTGCTCTCTGGCTCCTGCTCTCACATCCTGCCACC
TCTGCTCCTCTGCTTCTTCAGTCATGTCCCTTTCCTACCCCTGACTCTCC
TGCCTTCTTATAAGGACTGCTGTGAATACACCAGAGCCTCCCCTGTAATT
CAGAACTATCTTCCCCTCCCGAGATCCTTACCCTCACCTCCCAGCTCACC
AGTAAAGCAACTCGATCTCAGAACGTGGGAGTCCGCCGGGGAAAACTTGT
GTGGGCTACACCAAGCTTAAGTGCGTTACAATGAAGGGAGTTTTGATAAT
TCCTTTTGATGCGGCCCAATGGTTTTTTTTAAACAAATTTGAAAACATTT
TCCAGGGGTTTTAATCTTCTTTTTAAAGCTCCCGCCCCCCTTTTTTCCCC
CCCATTTATTATTTGGTGTCCCCTGCCTCCCCCTAAAGAGATATTAAGGT
GTGCCTCTTTGTCGGTTGGGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_l20.g1 MSMg01no048_l20.g1 CHROMAT_FILE:
MSMg01no048_l20.g1 PHD_FILE: MSMg01no048_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:01 2005
         (796 letters)



>mm_chr9_30231419_30232609
          Length = 1191

 Score = 1286 bits (665), Expect = 0.0
 Identities = 696/709 (98%), Gaps = 6/709 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   tcactggtgctggaaacaaaaacaggaaccaaaacacatccacgaggccagggagagaac 66
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 703 tcactggtgctggaaacaaaaacaggaaccaaaacaaagccacgaggccagggagagaac 644

                                                                       
Query: 67  tctgacgatgctgaaggtgagccgagacagggcatggggtagagttgttgctggaaaaca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tctgacgatgctgaaggtgagccgagacagggcatggggtagagttgttgctggaaaaca 584

                                                                       
Query: 127 ggaagtaatggaattcacacaaaagacagaggcttagaggagctagccaaggtcagcagc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggaagtaatggaattcacacaaaagacagaggcttagaggagctagccaaggtcagcagc 524

                                                                       
Query: 187 atgagtctctcatggaattaatgtatgttgttcagttgttctctcctcagatgctttgcc 246
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 523 atgagtctctcatggcattaatgtatgttgttcagttgttctctcctcagatgctttgct 464

                                                                       
Query: 247 cctcagcgtaggagagaagcaaacaggattggagcatgtagcaatgtttagaatagatag 306
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 463 cctcagcgtagaagagaagcaaacaggattggagcatgtagcaatgtttagaataga--- 407

                                                                       
Query: 307 agagaaatggcaaagagtcaggcccgtaacaccccgagaagtgaggtgctaaaacttaaa 366
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 -gagaaatggcaaagagtcaggcccgtaacaccccgagaagtgaggtgctaaaacttaaa 348

                                                                       
Query: 367 actatgctgtctaggtacacgggcaatgaaagagagccaggagagggacagtcggctgtg 426
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 347 actatgctgtctaggtacacgggcaatgaatgagagccaggagagggacagtcggctgtg 288

                                                                       
Query: 427 agaacgtactcaagtgtaataggagtagtatatgtgcaaaccagaaaaaggctcatggga 486
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agaacgtactcaagtgtaataagagtagtatatgtgcaaaccagaaaaaggctcatggga 228

                                                                       
Query: 487 aactagagatcagtccaagggggagtttctgattgctgatctgtcaagctgccatgagcc 546
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aactagagatcagtcca--ggggagtttctgattgctgatctgtcaagctgccatgagcc 170

                                                                       
Query: 547 ttgccactcacatcgacaccatttatcctcttacagtttggggagttagcagtctcaaat 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ttgccactcacatcgacaccatttatcctcttacagtttggggagttagcagtctcaaat 110

                                                                       
Query: 607 ggattggcagaagtgtgctcacccaggaggctagaaaaaagattgtgctttccagttctt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ggattggcagaagtgtgctcacccaggaggctagaaaaaagattgtgctttccagttctt 50

                                                            
Query: 667 tgcagtgtccaggggacacctgtgctctctggctcctgctctcacatcc 715
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  tgcagtgtccaggggacacctgtgctctctggctcctgctctcacatcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 1191
Length adjustment: 10
Effective length of query: 786
Effective length of database: 1181
Effective search space:   928266
Effective search space used:   928266
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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