BAC Information

Click to search

BAC

Clone NameMSMg01-048M05
Chromosome9 (Build37)
Map Location 79,051,369 - 79,051,799
singlet/doubletsinglet
Overlap genenone
Upstream geneGsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048M05.T7 (MSMg01no048_m05.b1)MSMg01-048M05.TJ (MSMg01no048_m05.g1)
ACCAG278443AG278444
length1,1241,238
length of high quality
(start - end)		493 (13 - 505)435 (78 - 512)
definitionCHROMAT_FILE: MSMg01no048_m05.b1 PHD_FILE: MSMg01no048_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:04 2005CHROMAT_FILE: MSMg01no048_m05.g1 PHD_FILE: MSMg01no048_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATAAATATCGGGGTTATTTGATTTTCTGAAGTCCACCTCCTTGAGTTC
TTTATACATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGA
TCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTGTTGACCATGTCTTTT
GCCTTGCAGGAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGA
TCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGC
CCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATATGTTTCAGTGTC
TCTGGTTTTATGTGAAGTTCCTTGATCCACTTATATTTGACCTTAGTACA
AGGAGATAAGTATGGATCGATTCGCATTCTTCTACACGATAACAACCAGT
TGTGCCAGCACCAATTGTTGAAAATGCTGTATTTCTTCCACTGGATGGTT
TTAGCTCCCTTGTCGAAGATCAAGTGACCATACGTGTGTGGGTTCATTTC
TGGGCCTTCAATTCTATTCCATTGGCCTACTTGTCTGTCTCTATACCAGT
ACCATGCAGTTTTTATCACAATTGCTCTGTATTATAGCTTTAGGTCTGAT
ATGGTGATTCCCCCATAAGTTCTTTTATTCTTGATAATACTTTTTGCTAT
CCTAGCTTTTTTGTTATTCCTGATAAATTTGTTCATTGCTCCTTCTATTC
TTTTTAATATTTTTTATTGTATTTTTGATTATTTATATATTTATTCTTCT
ACTTTTTCTTATTTTTATTTTTTATATTTATTATTTCCTTTTCTCTACCA
TTCTTCTTTTTTTCTATTTTTTTTTCATTTTTTTTTATTTTCCTTATCTT
TTTATTTATTTTTATTTTTTTTCGTTCATTTATTTTTTTCCTCTTTTATT
CCTTTCTAATATTCTTTTTCCTATCTCTTTCTAATTTTATCTTTTTCTAT
TTTCTCTTCTATTTTCTTATTTCTTTCTTTCTTTATTATTCTTTCCTCTT
TTTTTCTATCTTATTTGCTTTTCTTTTTTTCTCTTACTTTATCTATGTCT
TATTTATTATTCTATTCACTTTATCCATTTTTCTCTTTATTTTTTTTCTT
ATTATTTTCTTATCTCTATTTTTG

GATTTATTTTNNTTNAGCATGGATGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTAAAAGTATGAACATGC
CCGCACAGCATCTTTTAAAACCTACTCTGTGACTTACACTCAATTTAGGT
GTCTTGAAGCAGATGATGACTGTGGGAACTCAGATGGCCTTTACCACTTA
ATAGGGCAACACCCTGAGAGACAAACAGCATGTGTTCTCATACATGGAAT
CTAAACAAGCTGATCATGGAAGCAGAGAGTAGAATTGTCATTGCCAGGGG
CTAAGAGGAGGGTAAATGGGAAGAAGATGATCAAAGAGTACAGACTTACA
GTTGAAAGATGACTAAGATCTGGGAATCTTCAAGTATGTGACTATAGTTA
ATGATGTCGCATATGTGCACACACATGCACATGTTCACATAATCACTCAC
AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGGGAGGNANNNNNNNNNNTNCNNTCNNNCNNNCNNNNNNNNCNCN
NNNCCCNNNNNNNCCNNCNCNCCCCCCCCCCNCCCCCCCCNCCCCCCCCC
CCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCNC
NCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCTCCCCCCCCCTCCTCCCCC
CCCCCTCTCTTCTTTTTTTTTTTTTTTTTTTCTTTTTTTTCTTTTTCTTT
TTTTTTTTTTTTTTTCTTCTTTTTTTTTTTTTCTTTTCTTTTTTTTCTTC
TTTTTTTTTTTTTTTCTCTTTTCTTTTTTTCTTTTTTCTTTCTCTTTTTT
TTTCTCTTTTTTCCTTCTTCTTTTCCTTTTTTTCTCCCTTTCTTTTTTCT
TTTTTTTTTCCCTTCTTTTCCTTTTTTCCTCTTTCTTTTTTCTTTTTTTT
TTCTTTTTTTTTTTTTTTCTTTTTTTTCTTTTTTTTTTTCTTTTTTTCTT
TTNTTTTTTTTTTCTTCTTCTTTCTTCTTTTTTTTTTTTTTTCTCTCTCT
CTCTTTTTCTTTCCTTTTTTTTTTTTTTCTTCTCTTTTTTTCCTTTTTTC
TTTCTTTCTTTTCTTTTTTCTTTCTCTTNTTTTTTTTTCCTTTCTTTCTC
TTTCTTCTTCTTCTTTCTTCTCCTTTTTTCCTTTNTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_m05.g1 MSMg01no048_m05.g1 CHROMAT_FILE:
MSMg01no048_m05.g1 PHD_FILE: MSMg01no048_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:04 2005
         (435 letters)



>mm_chr9_79051167_79052001
          Length = 835

 Score =  768 bits (397), Expect = 0.0
 Identities = 421/431 (97%), Gaps = 4/431 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   tctttaaaagtatgaacatgcccgcacagcatcttttaaaacctactctgtgacttacac 62
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||
Sbjct: 203 tctttaaaagtatgaacatgcccgcacagcatcttttaaaagcaactctgtgacttatac 262

                                                                       
Query: 63  tcaatttaggtgtcttgaagcagatgatgactgtgggaactcagatggcctttaccactt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcaatttaggtgtcttgaagcagatgatgactgtgggaactcagatggcctttaccactt 322

                                                                       
Query: 123 aatagggcaacaccctgagagacaaacagcatgtgttctcatacatggaatctaaacaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatagggcaacaccctgagagacaaacagcatgtgttctcatacatggaatctaaacaag 382

                                                                       
Query: 183 ctgatcatggaagcagagagtagaattgtcattgccaggggctaagaggagggtaaatgg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgatcatggaagcagagagtagaattgtcattgccaggggctaagaggagggtaaatgg 442

                                                                       
Query: 243 gaagaagatgatcaaagagtacagacttacagttgaaagatgactaagatctgggaatct 302
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaagaaaatgatcaaagagtacagacttacagttgaaagatgactaagatctgggaatct 502

                                                                       
Query: 303 tcaagtatgtgactatagttaatgatgtcgcatatgtgcacacacatgcacatgttcaca 362
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 tcaagtatgtgactatagttaatgatgtcgcatatgtgcacacacacgcacatgttcaca 562

                                                                       
Query: 363 taatcactcaca----gagagaaagagagagagagagagagagagagagagagagagaga 418
           ||||||||||||    |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 563 taatcactcacacacagagagagagagagagagagagagagagagagagagagagagaga 622

                      
Query: 419 gagagagagag 429
           |||||||||||
Sbjct: 623 gagagagagag 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |