BAC Information

Click to search

BAC

Clone NameMSMg01-049B17
Chromosome9 (Build37)
Map Location 84,774,366 - 84,774,950
singlet/doubletsinglet
Overlap genenone
Upstream geneEG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049B17.T7 (MSMg01no049_b17.b1)MSMg01-049B17.TJ (MSMg01no049_b17.g1)
ACCAG278682AG278683
length1,2211,296
length of high quality
(start - end)
586 (114 - 699)399 (126 - 524)
definitionCHROMAT_FILE: MSMg01no049_b17.b1 PHD_FILE: MSMg01no049_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:46 2005CHROMAT_FILE: MSMg01no049_b17.g1 PHD_FILE: MSMg01no049_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCATTGGCCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCC
TGCACAGTCACAAAGCCCGTTAAGCATAAAGTTGATAAGGAAACTTTTTT
TCAAAGCCTAAAGACTTATGCACTTGTCCCCTTAGCCTTTTGGGTCATAT
TGGGATTCCAACTGCAAAGGAAATCTCACAGAGGCTATGGCATGTTGCTC
TGCACACATTGGTAGGAACATATGAATATCCTATTCTTTCAGAACTGTCA
GAAAACATAAAGGCATGGTGAAAGAACAGTAATTGGAGAATGTAACTTGC
AGATAATAAAAAAAAAACATTCATCAAAATTAAGCCAAAGTCTTAACAAA
CTTCTATCCAGTTACAATAGCCAATCTGAAGTTGTGGTCTTCACTTTGGA
TTTTATATTTTCACTATTAAACATATTTAATATTTGATATCGTTAATTTT
ATTCCTTTACCTACTACCCAATCTGAAAAGATTTTTAAGGAACATTTTTC
TAACATTTTCTTGATATTTGAAACTACTCTTTATTTACAACCTCATCATA
AATTTGATAAACCATGATTTAAAATGTATCCAGAAAAGTAGAAGAATAGT
TTTAAATTATTTTCTTTCATTTAAAGAAATGTGGCTTTTCCCTGTTGTTC
TTGTTTGTTTGTTTTTGTTTTGTTTTGTTTTAAAGGTTGTATTTGGGATT
TCAAGGACAGCTTGCTACTCCCAAAGCCAATACCATCTGTTCTAGTAACA
TTTCGCTTGCTGTAATAAAATACTTGTGACTGATGTAACTTATATAAAGC
AGACATTATTTAAGGTTACCATTTACGAGGTATATGTGTACTTCCCCTTC
ATGTATCAAGTGATCTTATATTGTTGTATGACCCTGGTACTTCATTTCCT
GATTTCGAATCTAATGTAAATTATCAATTTTGGATTATTATTTGCTTCTG
TAATTTCAATACTCTTATGATTTTTTTCTTCTTATTTACTTTCATTTTTA
ATCCTTCTCCAAATTTATTATTATTTTTATACTCTTNTATGTAATTTTCC
TCCCTAATATTAATATTCCTTAACTATCCTTTTTTTTTTCTTTTTCTCTT
ATTTTTTTTCTCTTATTCCCTTAATATAAATATGTCCTTCATTCAATATC
TATATATTCATTTTATATCCATTTTCCATTTTTCTATATTTCATTACTTT
TCCAAACATTAACTATAAAAA
NTTTCACATGGTAGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTTAGCCTTAGAGAAGATGTGGCTTTGTTAGA
AGAATTACCTCATTGTGGAGGCGCCCTTTGAGGTCATATATGCTCCATGT
ACACCCAATGTGGTATTCAGTCTCCTTCTGCTACCGGCAGTTCAAATTGA
AGAACTCTCAGTTCCTTCTCCAGCACCACATCTGTCTGGACACTGCCATG
CTTTCCACCATGATGATATTGAACTAAGTCTCTGAAACTGTAAGCCAGAT
CCAATTAAATGTTTTTCTTTGTAAGAGTTGCCTTTTTTCATGGTGTCCTT
CACAGCAAGAAAATCCTAAGTATGTATGCACATATATACATATATATATA
TATATATATATGTATGTGCATACATACATACATGCATATGATTATGAGAG
GCAGGACCGTGTCCTGTTTCTATCTGTCTCTGCCTATACCCTCTTTTGTT
GTTGTTTTTCGTCTGTTTGCTTTTTGAGTAAGGTTTTTCTCTCAATTATC
CTTGTTGTCCTGCACAGTTTCTCCTTATTCATTTTCTTTACTTTGATTTT
CTATCTTTTTTTTTTGTCCTTTGCTCACTTATTATTGTTTTTATCCCACT
TTTCTTTTCTTTTCTCTTTTCTTTTCTTTTCTTTTTTTTTTATTTTTTAT
ATTTTACTTTCTTTATATTTCTTCAACATTCCTTTAACTTTTTTATAATT
TATACATATTATTAACTTTTTATTTTCTACTTTTCTTTTTAACATTCTTT
TTTTACATCTCTATTTTTAATTCATTCCTTTCTTTATTTTTATTTTTTCT
TTTATCTATTTTACCTTATTATTTTTCTTTTTTATTTTTTTTTATTGATC
CTTGTATCTTTTCCTTCTTTTTTTCTTTTTATATTTCTACTATTTTCTAT
TTTTTCCTTTTCTTTACCATCTTTCTCATATTTTAATTATTTTCTTTTTT
TTCTATTTATCCAATTCTTTTAATATTTTTTATTATTATATTTTACCTCC
TTTTTTTTTTTATTTATTCTCTTATTCTTTTACTTTATTCTATTTTTATT
ATCTCTACTTTCTATTCATATCTATTATTTATCCCATCCCTCTTTTCATA
TTTTCTTTTTATTTTTATTCTATCTTTTTTACTACATTATTTTTATTCTC
TCTTCTTATCTTCAACTCATCTAAATTCTCATAATCATCTATTCTATTGA
CTTTTTATAATCTTTCTAATATCTTTTTTATCCTATATTTGTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_b17.b1 MSMg01no049_b17.b1 CHROMAT_FILE:
MSMg01no049_b17.b1 PHD_FILE: MSMg01no049_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:46 2005
         (586 letters)



>mm_chr9_84774166_84775154
          Length = 989

 Score = 1031 bits (533), Expect = 0.0
 Identities = 571/585 (97%), Gaps = 3/585 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttatgcacttgtccccttagccttttgggtcatattgggattccaactgcaaaggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||
Sbjct: 201 acttatgcacttgtccccttagccttttgggtcatattgggatcccaagagcaaaggaaa 260

                                                                       
Query: 61  tctcacagaggctatggcatgttgctctgcacacattggtaggaacatatgaatatccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcacagaggctatggcatgttgctctgcacacattggtaggaacatatgaatatccta 320

                                                                       
Query: 121 ttctttcagaactgtcagaaaacataaaggcatggtgaaagaacagtaattggagaatgt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttctttcagaactgtcagaaaacataaaggcatagtgaaagaacagtaattggagaatgt 380

                                                                       
Query: 181 aacttgcagataat---aaaaaaaaaacattcatcaaaattaagccaaagtcttaacaaa 237
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttgcagataataaaaaaaaaaaaacattcatcaaaattaagccaaagtcttaacaaa 440

                                                                       
Query: 238 cttctatccagttacaatagccaatctgaagttgtggtcttcactttggattttatattt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctatccagttacaatagccaatctgaagttgtggtcttcactttggattttatattt 500

                                                                       
Query: 298 tcactattaaacatatttaatatttgatatcgttaattttattcctttacctactaccca 357
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcactattaaacatatctaatatttgatatcgttaattttattcctttacctactaccca 560

                                                                       
Query: 358 atctgaaaagatttttaaggaacatttttctaacattttcttgatatttgaaactactct 417
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 561 atctgaaaagatttttaaggaacattttcctaacattttcttgatatttgaaactattct 620

                                                                       
Query: 418 ttatttacaacctcatcataaatttgataaaccatgatttaaaatgtatccagaaaagta 477
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 621 ttatttacaacctcatcataaatttcatacaccatgatttaaaatgtatccagaaaagta 680

                                                                       
Query: 478 gaagaatagttttaaattattttctttcatttaaagaaatgtggcttttccctgttgttc 537
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 gaagaatagttttaaattatgttctttcatttaaagaaatgtggtttttccctgttgttc 740

                                                        
Query: 538 ttgtttgtttgtttttgttttgttttgttttaaaggttgtatttg 582
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtttgtttgtttttgttttgttttgttttaaaggttgtatttg 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 989
Length adjustment: 10
Effective length of query: 576
Effective length of database: 979
Effective search space:   563904
Effective search space used:   563904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)