BAC Information

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BAC

Clone NameMSMg01-049D21
Chromosome9 (Build37)
Map Location 11,849,806 - 11,850,380
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039989, LOC622505, LOC100039680, LOC665285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049D21.T7 (MSMg01no049_d21.b1)MSMg01-049D21.TJ (MSMg01no049_d21.g1)
ACCAG278765AG278766
length1,1871,184
length of high quality
(start - end)		742 (51 - 792)623 (72 - 694)
definitionCHROMAT_FILE: MSMg01no049_d21.b1 PHD_FILE: MSMg01no049_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:03 2005CHROMAT_FILE: MSMg01no049_d21.g1 PHD_FILE: MSMg01no049_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTTTTNNNTTTACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTAGTGAAGAGATGGCGAGCTCTGGTTACTTCAGTGAGG
TCATCAGCTTCCGCTTCATCTTTGGCAGCTTCCACTTGTTCAGCAAAAGC
AGCTCCTCTAGATTGCTTCACAAATATTGACCTTTGAAAATGAGCCAAAC
TACTTAAATCATTTCTCATCTCCATGTGACACATGGCAGAAAACAATGCA
TTCACTGTTTCATGGTTTTCATCACAACATCTGAGATGTCATGAACAGAG
TAAATTGTTTAAAAGGCTGGCAGAGTATAGAGAGAATATAAAGACAGTGT
ATTACTTAAGGGATAATGCATGAGCCCTTAAGGAACAACCAGGTAAGTGG
ACAAGGATTGATCAGCAGATTAAATTGCACACAGTGTTGTTTCTAAAAGC
ATCACTTTGGATTGCCATCACAGGCAGGAGTCTCTATTTTACTTGCCTTT
TACCTCAGGTTCCTGAAACTCGTATTGTCCAGAAGCTTCTCATAAAACAC
CAAGATAGTTTTTGTTGTAGGGCAATGGGCTAACCACAAACAGCCTGGTC
TCCAGTCGAGCTAAGGTCTTGAAACCCAGCATGTGGTTAGCAGTCATGTA
GACAATGTCCCAAGCTTCTCCTATTCTGGATAGACTCCTCCACAGTTAGC
TAGCAACAGCAAGATAGCAGCCCACTATAAGAGGGGATGCTTGTCCCCTC
CTCGCTCTCTTGCTCTCTAAGCTTTTACCCCCCCTCTCTCTAAGCCTTTT
GCCTTTCTACTCTCTTTCTTTCTCTCTTTCTCTTCCCTCTTCTCTCCTCT
TGTCCATGGCCAGCCTCTTTCTCTCTCTCTTTAACTTCTCTCTTCCCTCC
TGCTTTTCTACAATAAAGCTCTAAAACCATAGACTGTCTCCGAAAGGACT
CTCACTTGCATGAAAAACCACCCAGCGGCCCCCTCTCCCCCTGGACCTCT
CCTAATTTCCCCCTCTGGGGCCCAAAGGTCACCTCAGGGCCCCCAATTTC
CGTCCTCAAACCCCTCTGAAAATATTCCGATATAAAAAGGTCCCAAAAAT
CGAAAAAAAATGGGCATGGGGGCTTGCCCCCTTGGCCTACACCCCCTGTT
TGGGAGGAAGTTACATAAAACTTTTCTATAAAAACAC

NTTTATAAGAAGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGCACAAAATTTAATAGGTAGGGAGAGAA
TGGGCAGCCTTATCTAGTCCCTGATTTTAGTGGGATTGCTTCATATTTCT
CTCCATTTAGTTTGATGTTGGCTATTGGTTTGCTGTATATTGCTTTTACT
ATGTTTAGATACAGGACTTAAATGCGTGATCTTCCCAAGACTTTTACCAT
GAAGCGGTGTTGAATTTTGCCAAATGCTTTCTCAGCTTCTAATGAGATTA
TCATGTGGATTTTTTCCCTCTGAATTTGTTTATGTAGTGATTATGTAGTT
GTATTTCTGAGTATTGAACCTTCTCTGCATCCTGGGACGAAATCTCCTTG
ATCATGATGAACCATGGTTTTGATGTGTTCCTGGATCTCGTTTGTGAGAA
TTTTATTTTTGCATTGATATTAATAAGGGAAATTGGTCTGAAGTTCTCAT
CCTTTGTTGGATCTTTGTGTGGTTTAGGTATAAGCATAGCTGTAACTTCA
TAGGATGAATTGGGTAGTGTTCCTTCTCTTTCTATTTTGTGAAATAGTTT
GAAAGGTATTGGTATTAGGTCTTCTCTGAGGTCTGATAGAATTCTGTACT
AAAACCATCTGGCCATGGGCTTTTTTTTTTTTTTTTTTTGCTCAGGAGAC
TTTTAATAATAGCTTCTATTTCTTTATGCCACTTGTGACTATTTAAATGC
TTCTTTCTGCTCCTCATTGAACTTTGTCCTCCTGTCTATAATATTCTCCT
TTTCATCCATCTTTTTCCCCTCTTGTTGATATTTACTCCTTTGCTATCTA
TCTTCTCTTTACTTTGTTTCTACTTTTTCTTTGTTCTTTCCTTTTTTCTA
CTTCCCTTCTTTCTCCGGTTATTCTTCTTTCCTTTCTTTTTATTCTTTTG
TATCTTTTTCTCTTTTTTTTTTTTTTTTTCTTTTCCTTATCGTTTCTTTT
TTCTTTTTATCTTCCTTTCCCTTCTTTTTTCTTCACTCTCTCTCACAATA
TTTTCTCTACTTCTACTCTTTCCTATTTTCTTCTTTCTTTTTTTCTTTAC
TTTCTTCTCTTTTCTTTTCTCATTTTCACCTTTTCCCTTTCTCTCTTTCT
CTCCCTCACATAACACTCTCCTTTCTCATTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_d21.b1 MSMg01no049_d21.b1 CHROMAT_FILE:
MSMg01no049_d21.b1 PHD_FILE: MSMg01no049_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:03 2005
         (742 letters)



>mm_chr9_11849666_11850807
          Length = 1142

 Score = 1065 bits (551), Expect = 0.0
 Identities = 569/575 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtagtgaagagatggcgagctctggttacttcagtgaggtcatcagcttccgc 64
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 715 gaattctgtagtgaagagatggtgagctctggttacttcagtgaggtcatcagcttccac 656

                                                                       
Query: 65  ttcatctttggcagcttccacttgttcagcaaaagcagctcctctagattgcttcacaaa 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atcatctttggcagcttccacttgttcagcaaaagcagctcctctagattgcttcacaaa 596

                                                                       
Query: 125 tattgacctttgaaaatgagccaaactacttaaatcatttctcatctccatgtgacacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tattgacctttgaaaatgagccaaactacttaaatcatttctcatctccatgtgacacat 536

                                                                       
Query: 185 ggcagaaaacaatgcattcactgtttcatggttttcatcacaacatctgagatgtcatga 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggcagaaaacaatgcattcgctgtttcatggttttcatcacaacatctgagatgtcatga 476

                                                                       
Query: 245 acagagtaaattgtttaaaaggctggcagagtatagagagaatataaagacagtgtatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 acagagtaaattgtttaaaaggctggcagagtatagagagaatataaagacagtgtatta 416

                                                                       
Query: 305 cttaagggataatgcatgagcccttaaggaacaaccaggtaagtggacaaggattgatca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cttaagggataatgcatgagcccttaaggaacaaccaggtaagtggacaaggattgatca 356

                                                                       
Query: 365 gcagattaaattgcacacagtgttgtttctaaaagcatcactttggattgccatcacagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gcagattaaattgcacacagtgttgtttctaaaagcatcactttggattgccatcacagg 296

                                                                       
Query: 425 caggagtctctattttacttgccttttacctcaggttcctgaaactcgtattgtccagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 caggagtctctattttacttgccttttacctcaggttcctgaaactcgtattgtccagaa 236

                                                                       
Query: 485 gcttctcataaaacaccaagatagtttttgttgtagggcaatgggctaaccacaaacagc 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 235 gcttctcataaaacaccaagatagtttttgttgtagggcaatgggctaaccacagacagc 176

                                              
Query: 545 ctggtctccagtcgagctaaggtcttgaaacccag 579
           |||||||||||||||||||| ||||||||||||||
Sbjct: 175 ctggtctccagtcgagctaaagtcttgaaacccag 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space:   828624
Effective search space used:   828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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