BAC Information

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BAC

Clone NameMSMg01-049I01
Chromosome9 (Build37)
Map Location 72,464,498 - 72,465,167
singlet/doubletsinglet
Overlap geneRfxdc2
Upstream geneCgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik
Downstream geneNedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049I01.T7 (MSMg01no049_i01.b1)MSMg01-049I01.TJ (MSMg01no049_i01.g1)
ACCAG278930AG278931
length1,1841,248
length of high quality
(start - end)
586 (84 - 669)671 (91 - 761)
definitionCHROMAT_FILE: MSMg01no049_i01.b1 PHD_FILE: MSMg01no049_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:35 2005CHROMAT_FILE: MSMg01no049_i01.g1 PHD_FILE: MSMg01no049_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTACTTGTNTTTTCATTGGCGCTAACACTCCTAAGGGAGAGGATCCGCG
GAATTCAAATACTGCCCCTGGAACCCCTTAAAGGCTCACAAGACCCAGGA
AGAGCACCTGCTGCTGCCGTAGAAGACCTACCTGCAGTTGAATTCCCAGC
ACCCACATGGCAACTAACAACCATCTGGAACATCAGTTCCGTTGCCCCCT
TGTGGCCTCTGAGGGTACTACATGCATATGGTGCACAGGCATACATGCAG
GTGAAAAACTATTCACATTAAATGAAACTAAAAACAAAGATCCAGGAAGT
TATGAAAACGTAAAAGATCTACAAAGCCCCTCCCCTGGGTGAGGTAAAGC
AGCAGCAGGGGAGAAGAGACTCTGACCAACAGAGCTCCTGTGGTCATGCA
GGGAGCTCCAGGGACACAGCCTTTGTAGGGCCTCACCCATGCTAGGAAGG
GCTTCTCTGCTGCCCACGAGTCATGCCTGATGCCAGAAGAGTCCCTCACC
CACATGCCTCAAAAGTTCTTCAAGTTAGCCCATTGGTTTGCCATGTTGGG
CTTTGGTAAGAATAAAAGGTTGGTCTGTTCTTGGTACCCTATCTTTGGTA
AGAGAGGTTTGTTCATGTTTTCCAAGGAAATGTCACTTGACATATGTTAA
CTGACATAATCCATACACTTTCAGCCCAGTGCTGTATGGTCCCATGCATC
TAATGTATGGATGTAGTCAGAGGCACAGAGAATACCAGACTGGTGGCTGC
CTGTATATGGTGGCAAAAGTGTTTAATGAATGTAGAATTATTCCATGAGG
ATGCTAAAAGTCACGGACATCACCTTTTCATGAAGCTTTTTCTATACGCC
ATCCAATGTCTTCGTTTAAATAGGCCTGTTCAGTTGTTCTCTTTCTTTTT
TTGAAATTCCTGTCCTACCACCTGCTATTTCTATATTCCATCCCCCTTCG
TTTAAAAAGGAATATTTTCAATTTTATTTTCCCCCCCCCCTTTCAAGATT
CCTTTTCATCTATTCTTCTTTATTATCCCTCTTTTCCCTAAATTTCATCT
CTCTCTTGTCCCTCTTAACACTTCTAACCTCCCTTATGTCTCTACTCTAA
TATAAACTTAATCCTCATTATCTTATTAAACACTTCTCTATCTCATACAC
TCCCTATGCTCATCCTAAATTTTACGTTCTATCT
NCCCTTCTTTTNNNAAATGATGTGAGNCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTATGATGGCAAAGTTC
TTCCCCTCAATGTGCAAGTTGTCCCTCAGCACATGCAGTCTGCGAAACAG
ACACCAAAGACTCCTCAGAACGTTCCAGCCAGTCCTGGTGGGGACCGTTC
TGCCAGACACCGCTACCCTCAGATCTTACCCAAGCCAGCAAACACCAGTG
CGCTCACCATCCGCTCTCCTACAACTGTGCTCTTTACTAGCAGTCCCATC
AAAACTGCTGTGGTACCTGCATCACACATGAGTTCTCTAAATGTGGTGAA
AATGACAACAATATCCCTCACACCCAGTAACAGTAATGCGCCTCTTAAAC
ATTCTGCCTCAGTCAGCAGTGCTACTGGAACAACAGAGGAATCAAGGATT
GTTCCTCAGATCAAGAATGGTTCTGTCGTTTCTCTTCCGTCTCCTGGGTC
CAGGGCTAGCAGCACTGGGCGAACTTCGGCTGTGGAAGTCAAAATGGACC
CAGAAGGTTCCATCAGATGAGCATCCTCTCCAGTGCCAAGAGAACTCTGA
GGGGACCAAAGCTCCCCTGACAACATCTAGTGCCCTTCGGGGCCAGAAAA
GTAATATAGATGGAACAGTACCAAAACCTTCTAATGAAGGTGTCACTGAA
GTCAAAACAACTAAGGTCTGTGACCAGAGGACCAAATGTCAAAATCGATG
TAATGAAATTCTGTCCGGCATCTCAGCTGGTCATATTCCAAGCACTGTTA
CTCTCTCGGTTGCTACTCAGAACTTACCTTTCACCAGCACCAGCTTCACA
TCTAATCGTGACTCAGTAAAATAAGAACCTAAAATATGCCCTTAAAGTCC
AAGTGATCCACTGTCCTGCTACTTTGCAAGAGTCTCAGGTGCCCTCCTGG
TAAGAAACCCAATTGGGGAACACCTTTTCTGCAGTTACTATAAAAAAGTC
ATAAAACCCATTCTTTGTTTAAAAAGGACCAATAAGTTTTCCATTTTTCG
GGGAAAACATTAAAGTTTTACCCACAGGGGGGCTCCAAATTCCTTNCCCG
GGTGTTCATTTCCGTGGTCTCTTTCTCCGCTATTATAAAAGCATTCTTCC
CCGTGAACCCCTTGCCTCTTGTCTTCCTGGTTAATCCATCTCTTTTGTTT
CTATCTAAATAAATGTTCTTTTTATTTTTTCTCGCCCAAGAATATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_i01.g1 MSMg01no049_i01.g1 CHROMAT_FILE:
MSMg01no049_i01.g1 PHD_FILE: MSMg01no049_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:35 2005
         (671 letters)



>mm_chr9_72464298_72465367
          Length = 1070

 Score = 1197 bits (619), Expect = 0.0
 Identities = 658/671 (98%), Gaps = 1/671 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaaagttcttcccctcaatgtgcaagttgtccctcagcacatgcagtctgcgaaacag 60
           ||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 201 ggcaaagttcttcccctcaatgtgcaagtggtcactcagcacatgcagtctgtgaaacag 260

                                                                       
Query: 61  acaccaaagactcctcagaacgttccagccagtcctggtggggaccgttctgccagacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccaaagactcctcagaacgttccagccagtcctggtggggaccgttctgccagacac 320

                                                                       
Query: 121 cgctaccctcagatcttacccaagccagcaaacaccagtgcgctcaccatccgctctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgctaccctcagatcttacccaagccagcaaacaccagtgcgctcaccatccgctctcct 380

                                                                       
Query: 181 acaactgtgctctttactagcagtcccatcaaaactgctgtggtacctgcatcacacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaactgtgctctttactagcagtcccatcaaaactgctgtggtacctgcatcacacatg 440

                                                                       
Query: 241 agttctctaaatgtggtgaaaatgacaacaatatccctcacacccagtaacagtaatgcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttctctaaatgtggtgaaaatgacaacaatatccctcacacccagtaacagtaatgcg 500

                                                                       
Query: 301 cctcttaaacattctgcctcagtcagcagtgctactggaacaacagaggaatcaaggatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcttaaacattctgcctcagtcagcagtgctactggaacaacagaggaatcaaggatt 560

                                                                       
Query: 361 gttcctcagatcaagaatggttctgtcgtttctcttccgtctcctgggtccagggctagc 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 gttcctcagatcaagaatggttctgtcgtttctcttcagtctcctgggtccagggctagc 620

                                                                       
Query: 421 agcactgggcgaacttcggctgtggaagtcaaaatggacccagaaggttccatcagatga 480
           ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 621 agcactgggggaacttcggctgtggaagtcaaaatggaaccagaaggttc-atcagatga 679

                                                                       
Query: 481 gcatcctctccagtgccaagagaactctgaggggaccaaagctcccctgacaacatctag 540
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 680 gcatcctctccagtgccaagagaactctgaggagacaaaagctcccctgacaacatctag 739

                                                                       
Query: 541 tgcccttcggggccagaaaagtaatatagatggaacagtaccaaaaccttctaatgaagg 600
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 740 tgccctttggggccagaaaagtaatacagatggaacagtaccaaaaccttctaatgaagg 799

                                                                       
Query: 601 tgtcactgaagtcaaaacaactaaggtctgtgaccagaggaccaaatgtcaaaatcgatg 660
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 800 tgtcactgaagtgaaaacaactaaggtctgtgaccagaggaccaaatgtaaaaatcgatg 859

                      
Query: 661 taatgaaattc 671
           |||||||||||
Sbjct: 860 taatgaaattc 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space:   700660
Effective search space used:   700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)