Query= MSMg01no049_i03.b1 MSMg01no049_i03.b1 CHROMAT_FILE:
MSMg01no049_i03.b1 PHD_FILE: MSMg01no049_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:35 2005
(735 letters)
>mm_chr9_9211820_9212954
Length = 1135
Score = 1384 bits (716), Expect = 0.0
Identities = 728/732 (99%), Gaps = 1/732 (0%)
Strand = Plus / Minus
Query: 5 gaattctataaacaacggtactacacagatttgcctgcaagtcttgtataacttttcttt 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1074 gaattctataaacaacggtactacaaagatttgcctgcaagtcttgtataacttttcttt 1015
Query: 65 tgcctgctgacgtggtagagtgcatcaattgattttgaatgatttacaattttagaatat 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 tgcctgttgacgtggtagagtgcatcaattgattttgaatgatttacaattttagaatat 955
Query: 125 atttattttctgtgtttgcctggtgcctatggaggttggcagagagcaccaaatattctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 atttattttctgtgtttgcctggtgcctatggaggttggcagagagcaccaaatattctg 895
Query: 185 ggactggggttttacagacagttgcgagctaccatgtgtgttcattggtgaagatatttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ggactggggttttacagacagttgcgagctaccatgtgtgttcattggtgaagatatttt 835
Query: 245 tatacatgtatccaaaacaaaacaaaacaaaaaaatctgtgatagacttaaaactaaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tatacatgtatccaaaacaaaacaaaacaaaaaaatctgtgatagacttaaaactaaaaa 775
Query: 305 ctcttagttttatatccccccttgcttccttcagtaattctagaaattttctggaatggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ctcttagttttatatccccccttgcttccttcagtaattctagaaattttctggaatggt 715
Query: 365 ccaaccattaactctacgttaatcttaataatggaaacaaagaaactatcctcagttccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccaaccattaactctacgttaatcttaataatggaaacaaagaaactatcctcagttccc 655
Query: 425 cattaaatgagtgtgttggccagaaaatgtaccattgtttcttttacaggacatgagtag 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cattaaaggagtgtgttggccagaaaatgtaccattgtttcttttacaggacatgagtag 595
Query: 485 acatagccttgaactttaccctcagtaagttattatctgtaatagttaatatttattctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 acatagccttgaactttaccctcagtaagttattatctgtaatagttaatatttattctg 535
Query: 545 aaatatataaagtttaggtggccaaaggaaatcaagacatcaaaaagctgaaaatccagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaatatataaagtttaggtggccaaaggaaatcaagacatcaaaaagctgaaaatccagg 475
Query: 605 tgacttagactgtaatatcagctgtttaggagggtgaatcaagagactcacaaagtcaaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgacttagactgtaatatcagctgtttaggagggtgaatcaagagactcacaaagtcaaa 415
Query: 665 gtgtgcctaggctatgaagtgagatcaaggccagcctgagccacttataagaca-ttttt 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 414 gtgtgcctaggctatgaagtgagatcaaggccagcctgagccacttataagacatttttt 355
Query: 724 ttttctgaatga 735
||||||||||||
Sbjct: 354 ttttctgaatga 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space: 815625
Effective search space used: 815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_i03.g1 MSMg01no049_i03.g1 CHROMAT_FILE:
MSMg01no049_i03.g1 PHD_FILE: MSMg01no049_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:36 2005
(704 letters)
>mm_chr9_9181105_9182207
Length = 1103
Score = 1307 bits (676), Expect = 0.0
Identities = 697/704 (99%), Gaps = 3/704 (0%)
Strand = Plus / Plus
Query: 2 ccttgcctgtcctcaagcacaaagaccccccaccatgcacatcactccttgtcaggtttc 61
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 202 ccttgcctgtcctcaagcacaaaggccccc-accatgcacatcactccttgtcaggtttc 260
Query: 62 cttaactaacaattcctcctaaatctgctcagagcagacagtaaactctccactatttct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaactaacaattcctcctaaatctgctcagagcagacagtaaactctccactatttct 320
Query: 122 gttagacctaagctcagtcccgtgtctactgtgatagtcctgacttctgctgtcctcagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttagacctaagctcagtcccgtgtctactgtgatagtcctgacttctgctgtcctcagt 380
Query: 182 cttccttacaggacttaaacacttatgaaagcataaatacacaaggaaccattggcaaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttccttacaggacttaaacacttatgaaagcataaatacacaaggaaccattggcaaaa 440
Query: 242 acactggagcatccttcaacacaagggattggcctccttgctgcattccccaaaggcagt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactggagcatccttcaacacaagggattggcctccttgctgcattccccaaaggcagt 500
Query: 302 tctgtgaaacacagtccccaagtttcaaaaattggaaaattctattgacatcttgtttta 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtggaacacagtccccaagtttcaaaaattggaaaattctattgacatcttgtttta 560
Query: 362 aatgtattaggaagaagttttgtttggttgttttttttt-atttacaaaataaactatgt 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aatgtattaggaagaagttttgtttggttgttttttttttatttacaaaataaactatgt 620
Query: 421 ctttaaaagaggatatttctcacagattgacatctcttcttattaaagaggaaaaactct 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ctttaaaagaggatatttctcacagattgacatctcttcttattaaagag-aaaaactct 679
Query: 481 agggccagctcctaaatcccacttctggatactttgaattcaagaagaaagatgaagaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agggccagctcctaaatcccacttctggatactttgaattcaagaagaaagatgaagaga 739
Query: 541 gcttcctggtgaactctacgtcagcaagaaaaacaagggctttatgggatagacttccca 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcttcctggtgaactctaagtcagcaagaaaaacaagggctttatgggatagacttccca 799
Query: 601 gttgcgtgcagtatgctcctctttccacaggctcatttttctgatctgcacaacaaggta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gttgcgtgcagtatgctcctctttccacaggctcatttttctgatctgcacaacaaggta 859
Query: 661 tttatacttcaggactgttgggaagagtagaggaggtttgtacc 704
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 860 tttatacttcaggactgttgggaggagtagaggaggtttgtacc 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1103
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1093
Effective search space: 758542
Effective search space used: 758542
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
