BAC Information

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BAC

Clone NameMSMg01-049I09
Chromosome9 (Build37)
Map Location 30,313,569 - 30,313,777
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19
Downstream geneLOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049I09.T7 (MSMg01no049_i09.b1)MSMg01-049I09.TJ (MSMg01no049_i09.g1)
ACCAG278944AG278945
length1,3621,408
length of high quality
(start - end)
---209 (87 - 295)
definitionCHROMAT_FILE: MSMg01no049_i09.b1 PHD_FILE: MSMg01no049_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:38 2005CHROMAT_FILE: MSMg01no049_i09.g1 PHD_FILE: MSMg01no049_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTACTATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTTCTTTTTTTTTTTCCTTTTGAGAATATTTCTNTTTTTTTAATATT
TTTAATTAGGCCCTTTTCTTCATTTACATTTCAAATGCTACCCCAAAAGT
CCCCCATACACTCCCCCCCCCACTCCCACTTCTTGGCCCTGGTGTTCCCC
TGTACTGAGGCATATAAAGTTTGCCGGACCAATGTCCCTCTCTTCCCAAT
GATGTCCAATAAGGCCATCTTCCGATACCTACTTTCTTAGCGACATGATC
CTTGTTTTCACCGATTAGTTAATATTGCAGCTTTACCTATAGAAATGATG
ACTCTTTTTTATCTTTTGTTGATATTTTCCTCATATATTTTATTTTAATT
ATCTTCATTTTTTTTTTATCTATGTTACTATCTCTATTTTTATATTTATT
TATGTATTCCCCCCCCCCCTCTAATGCCATAACGTTATATCATATATAAA
TTCTATTTATCAAACCATATATTTAATCACTGTTTTATCAACTTCTTATT
TATTCACTTTATTCTTTCTTTTATACTTTACTTTATAACTCTCTTTCTCT
TTTATTATATATCCTCTAATTAACAATTAATCTATATTATTTTCTTTTCT
TTTAACTCATTCTCTATTATTTTATTTATCTTATTATACTTCTATATTCA
TTCTTTTTTTATTAAATATATCTCATCCCAATAACCTCATACAAAATATT
TATTGTCCTTCCTATCTTAATTCATTTTATTTTTGTATATTCTCTATAAA
CTTTTACTTTTTTTTATTGTATTTCTATCCTTATTTGTCTTAATCTCATT
TTATTTTTTTTATTTCTTTCTATTATAATATTTTTACTATTTAACTCACT
TTCTATTTCTTCTTTTATAATTTCATTCTTCTTAACATACTTTCTCTATC
AATTATTCTTCTTTATTTTATCTTTTTTTAATTACTTTCATCACTTTTTC
TCTATCACTTAATTATTTAACTCCATTTATTTATTTATATTTCTTTATAT
TCATCTTATTTAATAATTATTTTTTATTTTTTTATTTCTTACTTTTCTAT
TTCTATTTATCTTTTCTTCACTTAATTCTCCTAATTTTCACTTTAATAAA
TTTATTTATTTTTTCCCCCCCCCACTTTATTATATATTTATTTTAATTAT
TTTTTTTTATATAAATATATATATTTAATGTTATTAACTTAGATTTCATA
TATTTTTATTATTTTTTCTAAATTTTTAATATTTATTATGTATTATTATA
TTCATAATTATTATATTTATTTTATACTCCTTCACCTTCTCACATTATCT
CTTTTTTAAACT
CTATTCTTTTNNAACACTGTGAGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTTTCCCAGTACAGAGTGCT
TTCCTGAAGGAGGCCACCCATCAGCTACAGTAGACTGGCCCCTGTGGATA
AGAACATGTATGGTATTTGCTCTAAGTAATTCTTTTCTTTGAAGCTTGAA
AATTAACATAGGTGAATATAGAGTTAAAGTAAATCCCTGGTTTTTAATTC
CAATTAAAATTATTTTAATTATAAACATTTTAATTAAAATGAATGACAAC
ATAATCTTAACCCTCACTTGAGTTATGTCCGCCAGCACTCTTACATACCA
CTGCTTCAAGAACAATAATCAAGGTTTTAGTAACTGCCTCCTAATTCATT
TTTAAAGAATATTTTTTTTTTGACTACGACTCATTATACTATCTTTATTT
TTTTCTCTTCCTCCCCCTCTCTTTTTATTACCCTCCCTCCTCTATCCTTT
TTCTCTTTTTAATTTCAATCCTTTCATCATTCTTTCATTCTTTATTTCTA
TCTCTTACTTCTTTTTTTCTCTTTCTTATTTATTCATTACCTTCAATTTT
ATTTATTTTTCCTTTTTATACTACTATCTTTCTTTCCTCCTCTTTCTCTT
TATTATCATCCTTTATTAATTTTTCTCCCTATATTTTTAATTCTTATTCC
TTTATTCCTTTCTTTATATTTATTATTTTTATTCCTTTTATTCCTATTCT
TTTACATCTTATATTCTTATTATTCTTTCTTTTCCTTCTTTCCTTCTATT
CTTTCCCTTCTCCCCTTTATCTATTTCTTATTCTTTTACATTCACTTATT
TTTCCTTTAACTATTTATTCTTTCTTTTTATCTTCTCATTCTTCTTTATC
CTATTCTCCTTTCTTATCTCCTTCATAGTTTTTTATTTCTTCTTTTATCT
TCTCCTCCTTTATTATCCTACTTATTTATTATTTCTAACATATTCTTTTC
TCAATTTATACCTCTACTTACTTCCTTTATTATATTATTCTTATTATCCT
CTATCTTATAATTTTTTATTATATACTATACTCTTTTATATGTCCTATAC
ATTATATTCCTTTTATTATCACCTTCTACTCTTTATATTTNCTCTTTCTT
TACTTTATATTTAATTCATTCATCTATTTTTTAATTTCTCATTTTCATTC
TTCTCTTTCTTACCTTTACTATTTCTTTTATTTTCTCTTCCCCTTCTCTT
TTTCTACTTCCCTTCCTTCATTCTTTCCTCTTCTCTTCTTTTTTCCTTTC
TTAACTCCTATATATCTTACTGACACTATCTTTTCTCATTACTTCTTCAT
TCTCACTCTTTCTTTATCTATTACTCCTCTCCTCGATTATCAATGCATCT
CACTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_i09.g1 MSMg01no049_i09.g1 CHROMAT_FILE:
MSMg01no049_i09.g1 PHD_FILE: MSMg01no049_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:38 2005
         (209 letters)



>mm_chr9_30313413_30314021
          Length = 609

 Score =  329 bits (170), Expect = 8e-95
 Identities = 200/210 (95%), Gaps = 2/210 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtacagagtgctttcctgaaggaggccacccatcagctacagtagactggcccctgtg 60
           |||||||||||||||||||||||||||||||  | |||||||||||||||||   |||||
Sbjct: 365 cagtacagagtgctttcctgaaggaggccacagagcagctacagtagactggtgtctgtg 306

                                                                       
Query: 61  gataagaacatgtatggtatttgctctaagtaattcttttctttgaagcttgaaaattaa 120
           | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 305 gctaagaacatgtatggtatttgctctaagtaattcttttccttgaagcttgaaaattaa 246

                                                                       
Query: 121 cataggtgaatatagagttaaagtaaatccctggtttttaattccaattaaaattatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cataggtgaatatagagttaaagtaaatccctggtttttaattccaattaaaattatttt 186

                                         
Query: 181 aattataaa-cattttaattaaaatgaatg 209
           ||||| ||| ||||||||||||||||||||
Sbjct: 185 aatta-aaagcattttaattaaaatgaatg 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)