Query= MSMg01no050_a06.b1 MSMg01no050_a06.b1 CHROMAT_FILE:
MSMg01no050_a06.b1 PHD_FILE: MSMg01no050_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:45 2005
(486 letters)
>mm_chr9_15279221_15280107
Length = 887
Score = 868 bits (449), Expect = 0.0
Identities = 476/485 (98%), Gaps = 1/485 (0%)
Strand = Plus / Minus
Query: 1 ggcaggccagcaagattgagggatttacctgtctcattccccagatctgaggttacagac 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 543 ggcaggccagcaagattgagggatttacctgtctcattccccagatttgaggttacagac 484
Query: 61 ctgagctgccttcctacccagctgatacgggtgctcgggatctgaacttaggtgcaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctgagctgccttcctacccagctgatacgggtgctcgggatctgaacttaggtgcaagtg 424
Query: 121 ctgcacccttcaaggcaccttgccagcgtaacccacacctttatgtcctattcagactgc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 423 ctgcacccttcaaggcaccttgccagggtaacccacacctttatgtcctattcagactgc 364
Query: 181 tgctgttccatatctgtctctcaaggcccatgagttagaggctcggttgcctgcctcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgctgttccatatctgtctctcaaggcccatgagttagaggctcggttgcctgcctcaga 304
Query: 241 ttatagcacttggaaatttctggatctttaggccttttttttttt-aacttttaaagttg 299
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 303 ttatagcacttggaaatttctggatctttaggctttttttttttttaacttttaaagttg 244
Query: 300 gaatgattttctttttctttctttattattttttgtttgttatctgtttttcaagacagg 359
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 243 aaatgattttctttttctttcttcattattttttgtttgttatttgtttttcaagacagg 184
Query: 360 gcttctctgtgcaataaccctggctgtcttgtacctgctttgtacaacaggctggccttg 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gcttctctgtgtaataaccctggctgtcttgtacctgctttgtacaacaggctggccttg 124
Query: 420 aacgcatagagaccgtgcctctgcctcctgagtgctaggattaaaggcatgcccagcctg 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aacgcatagagaccctgcctctgcctcctgagtgctaggattaaaggcatgcccagcctg 64
Query: 480 aaatg 484
|||||
Sbjct: 63 aaatg 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_a06.g1 MSMg01no050_a06.g1 CHROMAT_FILE:
MSMg01no050_a06.g1 PHD_FILE: MSMg01no050_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:45 2005
(742 letters)
>mm_chr9_15128203_15129343
Length = 1141
Score = 1342 bits (694), Expect = 0.0
Identities = 730/748 (97%), Gaps = 13/748 (1%)
Strand = Plus / Plus
Query: 1 tctggtttttataagcccactgactgataagtg---ccctacctcctttactgaggagta 57
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 201 tctggtttttataagcccactgactgataagtgggac---acctcctttactgaggagta 257
Query: 58 caaggagccactcatggctgaagggagcgaagcagtctctcattcagctaccaattccac 117
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 258 caaggagccactcatggctgaagggagcgaagcagtctctcattcatctacaaattccac 317
Query: 118 caaaccaagatgactgtggtctccaccttttaatcactcgtcctcaacactcacagcact 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caaaccaagatgactgtggtctccaccttttaatcactcgtcctcaacactcacagcact 377
Query: 178 gaacctaatatacctggtaaaagtcgctgtcttcttgagatgtcccaggggatgataagt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaacctaatatacctggtaaaagtcgctgtcttcttgagatgtcccaggggatgataagt 437
Query: 238 caaaatctagatgtggttctaagggtttaaagagctgacgatgcaagtgtggaaatatgt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caaaatctagatgtggttctaagggtttaaagagctgacgatgcaagtgtggaaatatgt 497
Query: 298 gttccaattctcgaaagtcaaggtccacagctggaactttaagggcaaaaaaaaaaaaa- 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gttccaattctcgaaagtcaaggtccacagctggaactttaagggcaaaaaaaaaaaaaa 557
Query: 357 --gagctaagtttaactttaaaaacgttaatgaagctcaggaaatgagtgctaagaacat 414
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 558 aagagctaagtttaactttaaaaactttaatgaagctcaggaaatgagtgctaagaacat 617
Query: 415 gctcattagtgttaaacatttctaatacagcaggattacttccatttgctctccatgctc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gctcattagtgttaaacatttctaatacagcaggattacttccatttgctctccatgctc 677
Query: 475 acaagatgcattcaaagttagtccaatcattactgttccccagatagaaaaaggcttcca 534
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acaagatgcattca----tagtccaatcattactgttccccagatagaaaaaggcttcca 733
Query: 535 tggttaattaagaatggcaggccacataagactacgtgggaaactgagctgtaagagctc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tggttaattaagaatggcaggccacataagactacgtgggaaactgagctgtaagagctc 793
Query: 595 cgagctctcacttatcttactcatcaccagtgtcctccttgttgtggggcccatgtgctg 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgagctctcacttatcttactcatcaccagtgtcctccttgttgtggggcccatgtgctg 853
Query: 655 ttgtcgatgtatactatcttatttaatttcaacttcttttatgaaaaaggtaaattaact 714
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ttgttgatgtatactatcttatttaatttcaacttcttttatgaaaaaggtaaattaact 913
Query: 715 tctctatggtcccacaggagcaaatgct 742
||||||||||||||||||||||||||||
Sbjct: 914 tctctatggtcccacaggagcaaatgct 941
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1141
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1131
Effective search space: 827892
Effective search space used: 827892
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
