BAC Information

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BAC

Clone NameMSMg01-050A18
Chromosome9 (Build37)
Map Location 93,870,051 - 93,870,783
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040114, LOC674371
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050A18.T7 (MSMg01no050_a18.b1)MSMg01-050A18.TJ (MSMg01no050_a18.g1)
ACCAG279259AG279260
length1,1681,157
length of high quality
(start - end)		667 (29 - 695)742 (70 - 811)
definitionCHROMAT_FILE: MSMg01no050_a18.b1 PHD_FILE: MSMg01no050_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:47:49 2005CHROMAT_FILE: MSMg01no050_a18.g1 PHD_FILE: MSMg01no050_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:47:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTACAATGGCGCTATACGACTCCTAAGGGAGAGGATCCGCGGAATTC
TTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTC
AGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCTGTA
GTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCT
TGAGAAGAGTTTTTGCTATCCTAGGGTTTTTGTTATTCCAGATGACTTTG
CAAATTGCTCCTTCTAATTCGCTGAACAATTGAGTTGGAATTTTGATGTG
CATTGCATTGTATTCGTATATTGCTTTTTTCCATATAGTCTTTTTTTATT
TGTTGATTTTGTCAATCCTTGATTATGTCATTCTTTTTATTCTCTTGATT
TTTTCTTTTATTTTTTTTCTTCCTATTTTTTAACTTTTTATCTTTATCTT
TTCTTTTACTTCCTTTTCTTCATTCTCCTTTTATTATTTTTTTTTTTTCT
CTCTTATTTTTTTTATCTGTTCGTCTTTTTTTTTTTATTTCTTTCTTTAC
TATCGTTATATTTATTTTTTATTCTTAATTATCTTTTCTCTTCTTTATGT
TTTATTCTTTTTATTTTTCTCTTTTTTTCTCTTTTTTCTTTTTCTTTTCT
TCATTCTCTCTTTCTTTT

TTTTTTTAACAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCTCAGATGGGGAAGAAGAAGAAAGGTCAG
AACCAAAGTGACAGAACATTGTGAGAGAGACTTGGTCTTCCATTAATCAC
ATGAACAATGGAAGGGACACCTAGATAAGAGATGGAAAAAGAATTTAGAA
GCTACTTTAGAAAGGTAAAGATCAGAATTGCCTCTAAATCTCCCAGGAAG
AAATATAGCCTTGCTGACACTTTGACTTTAACCCAGAGAAACATATTTAG
AATTTCTGACATTTATAAGATTGGTAATTCATGTTGTTTTAAGATACAGT
TTGTGATCATTTTAACAGCAGAAACAGAAAGCAAACACTGTTTTAGGGAT
GAACCAGAAACAACCAAATTAAAATGTTCAAATCACATAGTTCATGAGGA
CAATTTAAACAGTAAGAAGCAAGAGGAAAGAGATGAAACAAATTAGAAAG
GAACTTCAATCTTGATACACAGTGTTCATGTATTCTGTCCCTTTCCCTGA
TGGGTCAACCACCTAACCACTTCAGCCTGTGACTAACAGACATTAAGGTG
AGATTTAAAGGCATGACCATGACTCACTTATGATAACTGTGGCTGACACC
ACCTGTAGTTCACCAGTTCATAATAATTATTTGTGGCAAGTGTGATGCCA
TTAATTAAGACAGCACACACACACACACACACACACACACACACACACAC
ACACAACCCACTGGGCATGTGCACGTGTGTGTGTGTGTGTGTGTGTGTGT
GTTTGTGTGTGNGNGCTCTCNTTTTTTGGGGTCTCTCTCGCCTTTTCTTT
TTTTTTTTTTGGTGCGTTGGTTCTCTTTCTGTCTTTCCCTTCCTTTTTTT
TTTCCTTTTGTTCTTTCTTTTTCTTTTTTTCTTTTTTCCTCTTCTTTTCC
TTGTTTCTTTTTTTTCCTTTTTTCTTTTTTTCTTGCTCTCTTTTTTTTTT
TTTTTTCTCTTTTTTTCTTTTTTTTCTTTTTCTTTTTTCTTTTTTTTTTT
TGTTTTTCGCTTCTTTTTTCTTCTTTCTTTTTTTTTTCTTTTCTCTTTCT
TTTTTTTTTTTCTCTTCTTTTCTCCTTTTTTTTTTCTTTTCTCTCCTTTC
TTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_a18.g1 MSMg01no050_a18.g1 CHROMAT_FILE:
MSMg01no050_a18.g1 PHD_FILE: MSMg01no050_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:49 2005
         (742 letters)



>mm_chr9_93869850_93870991
          Length = 1142

 Score = 1352 bits (699), Expect = 0.0
 Identities = 727/741 (98%), Gaps = 8/741 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctcagatggggaagaagaagaaaggtcagaaccaaagtgacagaacattgtgagagaga 61
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 202 tctcagatggggaagaagaagaaaggtcagaaccaaagtgagagaacattgtgagagaga 261

                                                                       
Query: 62  cttggtcttccattaatcacatgaacaatggaagggacacctagataagagatggaaaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cttggtcttccattaatcacatgaacaatggaagggacacctagataagagatggaaaaa 321

                                                                       
Query: 122 gaatttagaagctactttagaaaggtaaagatcagaattgcctctaaatctcccaggaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaatttagaagctactttagaaaggtaaagatcagaattgcctctaaatctcccaggaag 381

                                                                       
Query: 182 aaatatagccttgctgacactttgactttaacccagagaaacatatttagaatttctgac 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaatatagccttgctgacactttgactttaacccagagaaacatatttagaatttctgac 441

                                                                       
Query: 242 atttataagattggtaattcatgttgttttaagatacagtttgtgatcattttaacagca 301
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 442 atttataagattggtaattcatgttgttttaagatacagtttgtgaccattttaacagca 501

                                                                       
Query: 302 gaaacagaaagcaaacactgttttagggatgaaccagaaacaaccaaattaaaatgttca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaacagaaagcaaacactgttttagggatgaaccagaaacaaccaaattaaaatgttca 561

                                                                       
Query: 362 aatcacatagttcatgaggacaatttaaacagtaagaagcaagaggaaagagatgaaaca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aatcacatagttcatgaggacaatttaaacagtaagaagcaagaggaaagagatgaaaca 621

                                                                       
Query: 422 aattagaaaggaacttcaatcttgatacacagtgttcatgtattctgtccctttccctga 481
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cattagaaaggaacttcaatcttgatacacagtgttcatgtattctgtccctttccctga 681

                                                                       
Query: 482 tgggtcaaccacctaaccacttcagcctgtgactaacagacattaaggtgagatttaaag 541
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgggtcaaccacctaaccatttcagcctgtgactaacagacattaaggtgagatttaaag 741

                                                                       
Query: 542 gcatgaccatgactcacttatgataactgtggctgacaccacctgtagttcaccagttca 601
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 742 gcatgaccatgactcacttatgacaactgtggctgacaccacctgtagttcaccagttca 801

                                                                       
Query: 602 taataattatttgtggcaagtgtgatgccattaattaagacagcacacacacacacacac 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 taataattatttgtggcaagtgtgatgccattaattaagacagcacacacacacacacac 861

                                                                       
Query: 662 acacacacacacacacacacacacaacccactgggcatgtgcacgtgtgtgtgtgtgtgt 721
           |||||||||||||||||        |||||||||||||||||||||||||||||||||||
Sbjct: 862 acacacacacacacaca--------acccactgggcatgtgcacgtgtgtgtgtgtgtgt 913

                                
Query: 722 gtgtgtgtgtgtttgtgtgtg 742
           |||||||||||| ||||||||
Sbjct: 914 gtgtgtgtgtgtgtgtgtgtg 934



 Score =  112 bits (58), Expect = 9e-29
 Identities = 89/102 (87%), Gaps = 8/102 (7%)
 Strand = Plus / Minus

                                                                       
Query: 645 cacacacacacacacacacacacacacacacacacacacacaacccac-tgggcatgtgc 703
           ||||||||||||||||||||||||||||||||||||||||||   ||| ||  ||||  |
Sbjct: 942 cacacacacacacacacacacacacacacacacacacacaca---cacgtgcacatgccc 886

                                                     
Query: 704 acgtg---tgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtg 742
           | |||   ||||||||||||||||||||||||| ||||||||
Sbjct: 885 a-gtgggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 143
Number of extensions: 39
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 4
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space:   828624
Effective search space used:   828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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