Query= MSMg01no050_e17.b1 MSMg01no050_e17.b1 CHROMAT_FILE:
MSMg01no050_e17.b1 PHD_FILE: MSMg01no050_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:24 2005
(406 letters)
>mm_chr9_117381960_117382764
Length = 805
Score = 731 bits (378), Expect = 0.0
Identities = 399/406 (98%), Gaps = 1/406 (0%)
Strand = Plus / Minus
Query: 1 gcccacgcatctgacctcttgcacaggcaacctgtgtgtttacttggaattccttttctt 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gcccacgcatctga-ttcttgcacaggcaacctgtgtgtttacttggaattccttttctt 547
Query: 61 caaagatctttttaggatgtctttgaagtttcaagttaatgagaatttttccaagtctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caaagatctttttaggatgtctttgaagtttcaagttaatgagaatttttccaagtctag 487
Query: 121 gatttgggttttcatcttcctggcactccttaagccccttaaacttaaaagcacacttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gatttgggttttcatcttcctggcactccttaagccccttaaacttaaaagcacacttct 427
Query: 181 gcctacatgtcttttcttctctctgtctcatagatttttctctcatgtgtttacttttga 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 426 gcctacatgtcttttcttctctctgtttcatagatttttctctcatgtgtttacttttga 367
Query: 241 gccaagtatttaaggatggaggctctacccttggctcagtcagcatgtatagtctattgg 300
|||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 366 gccaagtagttaaggatggaggctctacccttggctcagtcagcatggagagtctattgg 307
Query: 301 aatctgagacatgttcacagtctgtgctgcctccttccaaaggccataattaattaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatctgagacatgttcacagtctgtgctgcctccttccaaaggccataattaattaaaac 247
Query: 361 tctatttgaaaacagagatgtgcgttttacatgttggcagactgta 406
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 246 tctatttgaaaacagagatgtgtgttttacatgttggcagactgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 805
Length adjustment: 9
Effective length of query: 397
Effective length of database: 796
Effective search space: 316012
Effective search space used: 316012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_e17.g1 MSMg01no050_e17.g1 CHROMAT_FILE:
MSMg01no050_e17.g1 PHD_FILE: MSMg01no050_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:24 2005
(482 letters)
>mm_chr9_117230222_117231102
Length = 881
Score = 853 bits (441), Expect = 0.0
Identities = 471/481 (97%), Gaps = 1/481 (0%)
Strand = Plus / Plus
Query: 1 ctgagagagaaaaacagtttccagcctcaaacacgggagacgccagataagctaaatctt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ctgagagagaaaaacagtttccagcctcaaacaagggagacgccagataagctaaatctt 260
Query: 61 aaaacaaactcaccccaagtttatatcaataggcgcccaggaaggaggctgtttattctg 120
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 261 aaaacaaactcaccccaagtttataccaataggcgtccaggaaggaggctgtttattctg 320
Query: 121 gaggggggaaatcccaccccatttagtcatgtgaagttcatggatgttcagtctcagaac 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggggggaattcccaccccatttagtcatgtgaagttcatggatgttcagtctcagaac 380
Query: 181 atttgttgacgatgataaaaaaaatgctagaaattttattcttagagatgcatagtctat 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgttgacgatgataaaaaaa-tgctagaaattttattcttagagatgcatagtctat 439
Query: 241 gcaccatctactacacccctcacatagagctctggtcaggaggtgagggggccctctgga 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcaccatctactatacccctcacatagagctctggtcaggaggtgagggggccctctgga 499
Query: 301 caccctgtatctctctctgtaataattcagagtttaaattctgaaagaaatgaatggatg 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cacactgtatctctctctgtaataattcagagtttaaattctgaaagaaatgaatggatg 559
Query: 361 catggcatttttgttagctctttctctctacttgccttttaggtcacctctttgcatatt 420
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 560 catggcatttttgttagttctttctctctacttgccttttaggtcacttctttgcgtatt 619
Query: 421 agttggtattgcttaaagattcccaaagtcctggcatatattaactaaggaaataacatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agttggtattgcttaaagattcccaaagtcctggcatatattaactaaggaaataacatt 679
Query: 481 t 481
|
Sbjct: 680 t 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space: 411112
Effective search space used: 411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
