BAC Information

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BAC

Clone NameMSMg01-051K07
Chromosome9 (Build37)
Map Location 101,786,044 - 101,786,371
singlet/doubletsinglet
Overlap genenone
Upstream geneStag1, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051K07.T7 (MSMg01no051_k07.b1)MSMg01-051K07.TJ (MSMg01no051_k07.g1)
ACCAG280344AG280345
length1,3061,296
length of high quality
(start - end)
336 (83 - 418)329 (80 - 408)
definitionCHROMAT_FILE: MSMg01no051_k07.b1 PHD_FILE: MSMg01no051_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:37 2005CHROMAT_FILE: MSMg01no051_k07.g1 PHD_FILE: MSMg01no051_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTACATTGGGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTTTTTTAGCTCTGAGCCCCTTTTTTAATGCGGTTATTTGATTTTCTGGA
GTCCACCTCCTTGGGTTCTTTATATATACTGGATATTAGTTCCCTATCTG
ATTTAAGATAGGTAAAGATCCTTTTCCTATCTGTTGGTGGCCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGGTC
CCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTAA
GGAAATTTCCCCCTGTGACCATATCTTCGAGGCTTTTCCCCACTTTCTCT
CCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTCCCTTGATCCTTTT
TTATTTGACCTTAGTACAAGGAGCTAGGAATGGATCGATTCGCATCTTTC
TATTTGTTAACATCCAGTTCTGCCCGTACCATTTGTTGAAAACACTATCT
TTCTTTCACTTCATCGCTCTACCCCCCTTGTGCAATATTTATTTGTCTTA
TGTGTGTGTTTTCATTTCTGGTTCTTCTATTCTTTTCTTTTGTTTTTCTT
TGCTTTTCTCTTATCCCTTCTTTTTTGTTTCTCCTTTCTTTTTCTTTCTC
TTTTTTTTCTTTTCCTCCCTCTCCTGTTCTCTTTCCTTTTTTCCTCTTTC
TTTCTCTCTTCTTTATCCCTTTCCCTCTTTATCTTTTTCTTCTTTTCTCC
TCCTTTCTTCTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTCTTCTTTTT
TTTTTCTTCTTTCCCCTTTTGTCTCATCTTTTTTCTTTCTTTTCTCTTTT
CTTCTTCTCTTCCCTTATTTTTTTATTTTTTATTTTTTTTATTTTATTCT
TCTCCCTTTTCTTATCTTTTTTCCTTCTTTTACTCTCTTCTTTTTTCTCT
TTCTTTTTTTTTCTTTTCTGTCCCCTTTCTCCTTCCTTCCTCTTTTCTTT
TTCTCTTCTTTTTCTTCTCTATTTCTTTTTCTCCTCTCTCTCTTTCTTTT
TTTTCTTTTTTTCCCCTCTTCTTCACTTCTCTCTTCTCTCTCTTTCTTCT
TTCCTTTATCCTTTCTTTTTTTATCTTTTTTCATCTTCTTTTCTCTCTTC
TTCTTATTTTCTCTCTCTTCCTTTTTCTCTCTCTTTTACCCATCTTTTCT
TCTCTCCTTTTTTCCCCTTTCTTCTTTTTTTCCCTTTTTGTTATTTCTCT
TCTCTTCTTTTCTTTCTTCCCCTTCTTCTCTTTCTTCTCCTCTCTATTTT
TCTTTC
CTTTTTTTGAACATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCTCTTTCACATAAAGCCCAATTCCCGA
GAACTTCAAAATTCCCACTGATAAATAGATGCTTCGGAAAAGTTGGAATT
ACCCTCCATATAGGGAACATGTTCTCACGGGTCCTCATTTAGCTACAGTC
CTGTGAGCTAGCACCACTGGCTTGGACAGCCACCACAGCACAGAGTTAGC
TCCCCTCTGCCAGGCAAAGAAAGGAAGGTGCAATTAAACATCCCCAGCAT
ACAAGGGCGGCTTGAAAGGGATTTTCTAAGTACATCAAGAGGAAACGGCT
TCCTGAGTGTTTCCAAGGAGAGACCCTTGAGCCCCCATGGTGTTCTTCAC
CGCCCACCTTGTTCTTTATGGTATGTTCTTCACATAGCAGGTCTGATGCG
AGCCTGTCTGTTGTTGACCCCCCCCGCCCATGGGTTCTTCCCAGTGCCAG
ACTCTTGCCGCCTGCCTGCAGCCATATGGTTTTCTAATTCTAGCTCCTCG
TCTCTTGTTCTCTCTACCCATCTTGCATCTTGCCGCCTGCCATCTCTGTT
TACTTCCCTGACATATTTTTGCTCATCATTTGTTCCGTATTCACCCGTCT
ATGCCTCTTTTTGGTATTTAGACCTCTTTGTTTCTTCCTGCTGTCTCACT
TTTCCGTTCCCTTTTTTTTCTTCCTCTTTGTTTTTTTTCTTCTTTCTTTT
TCTTCTCTCGCACCTTTCTCTCTCTCTTTCTCTTTCCTTGTTTTTCTTTT
TTCTTCTTCTCATCTCTTCTCTTTTTTCATTTTCATTCTTTCTTTTATTT
TCTTCTTTTTTTTCATTTCTTTTTTTCCATTTCTTTTTTTTTTTCTTCTT
CTTTCTTTTTTTCCTTTTTCTCCTCTTTCCTTTTTTTCTCCTTTCCTCTC
TTTTCTTTCTCTCTTTTTTTCTTCTTTTTCTTCTCTCTTTTTCCTCTTTC
TTTCCCTATTTCTCTCCACCTTCTTCCTTTTTTCCTATTCCCTTTTCCTT
TCCTCTTATCTCATCTTTTACTTTACTCCTCTCTATTCTTTCTCTTCCAT
CTCTTATTCATTATTTATTTTTTCCCTTTTTCCATCTTTCTTCTCTCTTC
TTTTCTTCTCTTATTTCCCTTTTATCTCTCCTTTTCTTTCTTCCTCTTAT
CTTCATCTTATCTCCTCTTCTTCTTTCTTCTCTTCTTTTTTCTACTCTCT
TATCTTCCTCTATCTCCTCCTTATCTTTCCTCTTATCTCCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_k07.g1 MSMg01no051_k07.g1 CHROMAT_FILE:
MSMg01no051_k07.g1 PHD_FILE: MSMg01no051_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:37 2005
         (329 letters)



>mm_chr9_101785844_101786571
          Length = 728

 Score =  567 bits (293), Expect = e-166
 Identities = 320/329 (97%), Gaps = 1/329 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacataaagcccaattcccgagaacttcaaaattcccactgataaatagatgcttcggaa 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||
Sbjct: 528 cacataaagcccaattcccgagaacttcaaaattcaaactgataaatagatgctttggaa 469

                                                                       
Query: 61  aagttggaattaccctccatatagggaacatgttctcacgggtcctcatttagctacagt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 468 aagttggaattaccctccatatagggaacatgttctcacaggtcctcatttagctacagt 409

                                                                       
Query: 121 cctgtgagctagcaccactggcttggacagccaccacagcacagagttagctcccctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cctgtgagctagcaccactggcttggacagccaccacagcacagagttagctcccctctg 349

                                                                       
Query: 181 ccaggcaaagaaaggaaggtgcaattaaacatccccagcatacaagggcggcttgaaagg 240
           | |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 348 caaggcaaagaaaggaaggtgcaattaaacatccccggcatacaagggtggcttgaaagg 289

                                                                       
Query: 241 gattttctaagtacatcaagaggaaacggcttcctgagtgtttccaaggagagacccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gattttctaagtacatcaagaggaaacggcttcctgagtgtttccaaggagagacccttg 229

                                        
Query: 301 agcccccatggtgttcttcaccgcccacc 329
           ||||||||||||||||||||  |||||||
Sbjct: 228 agcccccatggtgttcttca-tgcccacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 728
Length adjustment: 9
Effective length of query: 320
Effective length of database: 719
Effective search space:   230080
Effective search space used:   230080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)