BAC Information

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BAC

Clone NameMSMg01-052D24
Chromosome9 (Build37)
Map Location 45,388,394 - 45,388,677
singlet/doubletsinglet
Overlap geneDscaml1
Upstream geneDdx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2
Downstream geneCep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052D24.T7 (MSMg01no052_d24.b1)MSMg01-052D24.TJ (MSMg01no052_d24.g1)
ACCAG280788AG280789
length699700
length of high quality
(start - end)
535 (70 - 604)284 (69 - 352)
definitionCHROMAT_FILE: MSMg01no052_d24.b1 PHD_FILE: MSMg01no052_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:49 2005CHROMAT_FILE: MSMg01no052_d24.g1 PHD_FILE: MSMg01no052_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAACCGCGGAATTCTT
TATATGTGTTTCAAAGACAAGTCTCTTACTGGGTGTTTACTTTATGGAAC
GTTCGCCTTGTTCTGTGACCTGTCCTTTTGGTTTCTTGATGGCATCTTTT
GAAGCAGAAGACAGCTTCATTTTGATGAAATACAGGTTGTCTGTTTTTCT
GTCTGTTGCTGGTACTTATCCAGGGAGCCACCACCTAATCTGAGGTCTTG
CAGATTTACCTCTTTGTGCTCTAAGATTCTGTAGTTTTAGATGGGCTATG
TGGGTCTTTGATCCATTCTGAGTCAGTTTTTCGGTGTGAGGTTGGGGTCT
GCCTCCATCCTTATGACTGCAAGCATCCACTTGACATGCCCTTTCTCGTT
TGAAGGCCTTGGCATCCTTGCTAAGATTGTGAGGGTTTATTTCTGGACCC
TCACTTCTGTTCTATTATTCTAATTTTGACATCGTTGTCATTGTTGCTTT
GAGACAGGGCCTCAGTCTATAGCCCTGGCTGGTCTGGAACTCACTATGTA
GACCAGACTGGTCTCAAACTCATAGAGATCCACCTGCCTCTACCTCTTAA
GTGCTGTGATAAAAGACTTGCCACTGCGCCTGGCTGTTGTCTGGTTATTC
TAAGTATTGATATGCCAGTACCTTGACTGCTATAGCGTTTAAGTCCGTC
GATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCCTGCTAATCCCCCTTTGTCAGCTCTGATG
CCGACATTGCAATACCAGCCTCGTCCCAGCGATTTGAGAGGGATTACAGA
CCCTCAATCCTTCAGCATGTGCGAGAAGAATGTTTTCTCAAATCAAATTT
TTCACAAATCTGTTTTCAAAAATAATCAAGGTGCAAATCCCCCTCAGAAT
GGCAGGATTGGGGGGAGACACCGGCTCTCCCTCACGCAACATAGCAACAG
AATACTATCTCTGAGGAGGGAGTGTGGGGGGAGACACAGAGCTACCTGGC
CAXXXXXXXXXXXXXXXXXXXTGTGCTTGCTGGGGTGGGGGGGACTCTGT
AAGAGAGGCTGGGGTGGGCAGATGCTGTGGTACAGGCTCTTGCTAATATT
GACTGGAATGCTGACTCTGAGGGGTCCTATATATGGGAGCAAGATGGGGA
AATAATAAAGCCAGATTCCAGTTAGTGTATGTGTTTCAATCAGCTATCAT
GTGACCCACACCAGGCTGGGCATTGAGGGGCACAGATGATAAGTATGGTT
CTATTTACTCTTGTCTTGAGGAAACTAGTCTAGCTGAGGAGCAGCTGTAT
ATCTAGGTTCCTGGATACAGGCCAGGCTGGGAACAAGGTTAGCATGGAGC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_d24.g1 MSMg01no052_d24.g1 CHROMAT_FILE:
MSMg01no052_d24.g1 PHD_FILE: MSMg01no052_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:49 2005
         (284 letters)



>mm_chr9_45388194_45388877
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctgctaatccccctttgtcagctctgatgccgacattgcaataccagcctcgtccca 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tccccgctaatccccctttgtcagctctgatgccgacattgcaataccagcctcgtccca 425

                                                                       
Query: 61  gcgatttgagagggattacagaccctcaatccttcagcatgtgcgagaagaatgttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gcgatttgagagggattacagaccctcaatccttcagcatgtgcgagaagaatgttttct 365

                                                                       
Query: 121 caaatcaaatttttcacaaatctgttttcaaaaataatcaaggtgcaaatccccctcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caaatcaaatttttcacaaatctgttttcaaaaataatcaaggtgcaaatccccctcaga 305

                                                                       
Query: 181 atggcaggattggggggagacaccggctctccctcacgcaacatagcaacagaatactat 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 304 atggcaggattggggggagacaccggctctcccgcacgcaacatagcaacagaatactat 245

                                                       
Query: 241 ctctgaggagggagtgtggggggagacacagagctacctggcca 284
           |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 244 ctctgaggagggagggtggggggagacacagagctacctggcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)