Query= MSMg01no052_i04.b1 MSMg01no052_i04.b1 CHROMAT_FILE:
MSMg01no052_i04.b1 PHD_FILE: MSMg01no052_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:09 2005
(575 letters)
>mm_chr9_29788059_29789033
Length = 975
Score = 982 bits (508), Expect = 0.0
Identities = 556/572 (97%)
Strand = Plus / Minus
Query: 4 ggaattcagtacagcatacccacaagatcattaagcctagcagtttctttgactgggcta 63
|||||||||||||||| | |||||||||||||||| || |||||||||||||||||||||
Sbjct: 775 ggaattcagtacagcagatccacaagatcattaagtctggcagtttctttgactgggcta 716
Query: 64 tgtgaccttagagcagctatttccaggggagggtcccttgtctttctatgaagtcatccc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgtgaccttagagcagctatttccaggggagggtcccttgtctttctatgaagtcatcct 656
Query: 124 gaggcaccttgcccactggagagtttggctgacagaggcaaccgtgggagggacaccctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaggcaccttgcccactggagagtttggctgacagaggcaaccgtgggagggacaccctt 596
Query: 184 ctctcacatttagtatgttgattgttgattatgtgctgagaatacagtgtgttgtccttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctctcacatttagtatgttgattgttgattatgtgctgagaatacagtgtgttgtccttc 536
Query: 244 agtggcttacatttgagatagaagagacaattacagacaaactggtagagaacttttgac 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agtgacttacatttgagatagaagagacaattacagacaaactggtagagaacttttgac 476
Query: 304 ctaggacagactccgaaggggaaaggatgtatatgatttctaactgttctacttgcctgc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 475 ctaggacagactccgaaggggaaaggatgtatatgatttctaactgttctactcgcctgc 416
Query: 364 cattgttcctatgtttgtcttttccactcaagcacaacaggttggcaatctttccggagc 423
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 415 cattgttcctatgtttgtcttttcctctcaagctcaacaggttggcaatctttccggagc 356
Query: 424 aatcagacagcgcctcggatttccgccttccctgctgacatgaggcctccctgcctttta 483
||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatcagacaactccttggatttccgccttccctgctgacatgaggcctccctgcctttta 296
Query: 484 cctgtcctgccatccccaaaagtcagtggctgccaggaacaatctcctcccctgtatatg 543
|||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 295 cctgtcctgctgtccccagaagtcagtggctgccaggaataatctcctcccctgtatatg 236
Query: 544 gtgctcagttctgggatggacatcctgatgag 575
||||||||||||||||||||||||||||||||
Sbjct: 235 gtgctcagttctgggatggacatcctgatgag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_i04.g1 MSMg01no052_i04.g1 CHROMAT_FILE:
MSMg01no052_i04.g1 PHD_FILE: MSMg01no052_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:09 2005
(508 letters)
>mm_chr9_29633775_29634684
Length = 910
Score = 944 bits (488), Expect = 0.0
Identities = 504/510 (98%), Gaps = 2/510 (0%)
Strand = Plus / Plus
Query: 1 tgagaatctatacatattcaagaacagaatggggagaggaaagatggagtattcagagtg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tgagaatctatacatattcaagaacagaatggggagaagaaagatggagtattcagagtg 260
Query: 61 agccaaagatgggctgtctgcattctagtccctggacaaactttcaatcttcagcaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccaaagatgggctgtctgcattctagtccctggacaaactttcaatcttcagcaaacc 320
Query: 121 catgccccacattaagttcaccctggagtaaagctttccttctgagacagcctgatctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 catgccccacattaagttcaccctggagtaaagctttccttctgagacagcctgacctga 380
Query: 181 ggaggaagtgtgtcccctgacatcctcctagaagatgcacacagcccgtgggggaggtga 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ggaggaagtgtgtcccctgacatcctcctagaagatgcacacagcccatgggggaggtga 440
Query: 241 gatgtcacagttcaatgtcacagattt--gagtcaacttgaaagttatgtgttctgcatg 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 aatgtcacagttcaatgtcacagatttttgagtcaacttgaaagttatgtgttctgcatg 500
Query: 299 aagccacattcctggcttcattttgtaatacctgctgtgatactttctcccagaaaacct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagccacattcctggcttcattttgtaatacctgctgtgatactttctcccagaaaacct 560
Query: 359 ggctatcaaaccaaaggctgtctgtgcacagtgtactgacagaggatccccagttccata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctatcaaaccaaaggctgtctgtgcacagtgtactgacagaggatccccagttccata 620
Query: 419 aggaactcaagcttaggaataattcatttaaacaccaaatacactcccaactctatcttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggaactcaagcttaggaataattcatttaaacaccaaatacactcccaactctatcttt 680
Query: 479 ttaaccagttattccattctgaggcatcca 508
||||||||||||||||||||||||||||||
Sbjct: 681 ttaaccagttattccattctgaggcatcca 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 910
Length adjustment: 10
Effective length of query: 498
Effective length of database: 900
Effective search space: 448200
Effective search space used: 448200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
