Query= MSMg01no052_j12.b1 MSMg01no052_j12.b1 CHROMAT_FILE:
MSMg01no052_j12.b1 PHD_FILE: MSMg01no052_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:15 2005
(615 letters)
>mm_chr9_11285040_11286054
Length = 1015
Score = 1112 bits (575), Expect = 0.0
Identities = 602/611 (98%)
Strand = Plus / Plus
Query: 5 gaattccatcctattcggagtacgcatttgctttgaagtgaattgaggtgctttcccacc 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcctaatgggagtacgcatttgctttgaagtgaattgaggtgctttcccacc 264
Query: 65 acttctctatacccttctgcttggatgtggatcagtactttcatgacagcctcacagcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttctctatacccttctgcttggatgtggatcagtactttcatgacagcctcacagcac 324
Query: 125 acttgtcctgtggttttcaatgtcaggtattatgattcgtatcctcaaatagttcccagt 184
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 325 acttgtcctgcggttttcaatgtcaggtattatgattcttatcctcaaatagatcccagt 384
Query: 185 agaaacagtcacccgctttctggtagtgtgccaagtgaatgaatgttcctgtgatttttc 244
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaacagtcagctgctttctggtagtgtgccaagtgaatgaatgttcctgtgatttttc 444
Query: 245 tctctgaacatacagtttttcgtcttgcataattaacctgtgagtctaacacatccagca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctctgaacatacagtttttcgtcttgcataattaacctgtgagtctaacacatccagca 504
Query: 305 atactatatccaggtaatgggaagtatattaaaccccaagaaatccagtggtaatattta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atactatatccaggtaatgggaagtatattaaaccccaagaaatccagtggtaatattta 564
Query: 365 caaattttcttttgcatatgaatatattagttttctgggcagagaaaagatcaatttaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaattttcttttgcatatgaatatattagttttctgggcagagaaaagatcaatttaat 624
Query: 425 ttttggtatcatgtgttttcctattccaccatgattatcattacaaaaactagaaataag 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 ttttggtatcatgtgttttcctattccaccatgattatcattacaaaaactagaaagaag 684
Query: 485 taaaagccgtctgctatgacatctgtgaggcaaacaatcagaatttacttgaggtgagaa 544
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaaagcagtctgctatgacatctgtgaggcaaacaatcagaatttacttgaggtgagaa 744
Query: 545 tgtccagaaaagaaaatgaggaaggactttattataacaacttatgcctgagatttctaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtccagaaaagaaaatgaggaaggactttattataacaacttatgcctgagatttctaa 804
Query: 605 atcaacatggc 615
|||||||||||
Sbjct: 805 atcaacatggc 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_j12.g1 MSMg01no052_j12.g1 CHROMAT_FILE:
MSMg01no052_j12.g1 PHD_FILE: MSMg01no052_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:15 2005
(579 letters)
>mm_chr9_11325433_11326409
Length = 977
Score = 1015 bits (525), Expect = 0.0
Identities = 565/579 (97%), Gaps = 2/579 (0%)
Strand = Plus / Minus
Query: 1 agtgtgttttgataaaacacaaaaataaaaattgtggctaggtcgacactaagagacgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 agtgtgttttgataaaacacaaaaataaaaattgtggctaggtcgacactaagagacgat 718
Query: 61 tattatcgactttaacttaacacgactccataatctaacaggaaaagttaaatctaaaat 120
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 717 tattgccgactttaacttaacatgactccataatctaacaggaaaagttaaatctaaagt 658
Query: 121 gcattagatatatatactaagtatttgataaatggatttttgccaaataatttatttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gcattagatatatatactaagtatttgataaatggatttttgccaaataatttatttaaa 598
Query: 181 tattctctaaagcaacaatgacaacctgcaatggggtttttgttttgaaaatagtatgtt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 597 tattctctaaagcaacaatgacaacctgcaatggggttcttgttttgaaaataatatgtt 538
Query: 241 gaatatcagagtgaggatgtgtactgctggttcatgctctaatattctggagtaaatgac 300
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 537 gaatatcagagtggggatgtgtactgctggttcatgctctaatattctgaagtaaatgac 478
Query: 301 aaagcatttactcagagagaacatttttttttattacaaagatattctactgagacaata 360
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 477 aaagcatttactcagagagaaca--tttttttattacaaagatattctactgagacaata 420
Query: 361 tataagtgatactattgaacaacttcatgaagtattagagaacagaagtatatactctat 420
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 419 tataagtgatactattgaacaacttcacgaagtattagagaatagaagtatatactctat 360
Query: 421 ggtttgtgtttcaagggtattgtctaagagaaatctcactagtcaaaaattgtacatatt 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 359 ggtttgtgtttcaagggtattgtctaagagaaatctgactagtcaaaaattgtacatatt 300
Query: 481 atctttaaaaatggtcaaacaagtacaaagggaagaaaatagcatggatttcatttggat 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 atctttaaaaatggtaaaacaagtacaaagggaagaaaatagcatggatttcatttggat 240
Query: 541 tttagaaagatgtctgtacctttagggaaagaaagaata 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tttagaaagatgtctgtacctttagggaaagaaagaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 977
Length adjustment: 10
Effective length of query: 569
Effective length of database: 967
Effective search space: 550223
Effective search space used: 550223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
