Query= MSMg01no052_p22.b1 MSMg01no052_p22.b1 CHROMAT_FILE:
MSMg01no052_p22.b1 PHD_FILE: MSMg01no052_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:46 2005
(229 letters)
>mm_chr9_107858884_107859512
Length = 629
Score = 420 bits (217), Expect = e-122
Identities = 226/229 (98%)
Strand = Plus / Plus
Query: 1 cgagacagtcatcagaggcatacactgtcagaggagaggggacaagcgactagtggatct 60
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 201 cgagacagtcatcagaggcatacactgtcagtggagaggggataagcgactagtggatct 260
Query: 61 ccccttgggctctcagggcctctaagaccctgagctgtatgaaggacttacggtcttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccttgggctctcagggcctctaagaccctgagctgtatgaaggacttacggtcttcct 320
Query: 121 tccattctcactagtcagggaagatgtgtgaatccaccactccctaacctgcctgggcct 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tccattctcactagtcagggaagatgtgtgaatccaccattccctaacctgcctgggcct 380
Query: 181 cgaaattgtctggagagcatggtgtagtggcagatgctgggcctttcca 229
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgaaattgtctggagagcatggtgtagtggcagatgctgggcctttcca 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no052_p22.g1 MSMg01no052_p22.g1 CHROMAT_FILE:
MSMg01no052_p22.g1 PHD_FILE: MSMg01no052_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:46 2005
(564 letters)
>mm_chr9_107944412_107945375
Length = 964
Score = 779 bits (403), Expect = 0.0
Identities = 412/417 (98%), Gaps = 4/417 (0%)
Strand = Plus / Minus
Query: 152 aagggcagaggacatcatcaggtgactcttctccattggactcta----tattttttgag 207
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 964 aagggcagaggacatcatcaggtgactcttctccattggactctatctttattttttgag 905
Query: 208 acagtgagcttcaggaacctgtctctttgtctctacactctctgtgctgtagttacaggc 267
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 904 acagtgagcttcaggaacctgtctctttgtctctacactctcagtgctgtagttacaggc 845
Query: 268 atagcctggctttttttgagctctgcagatcttcaggctcacagagcaggcacattactg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 atagcctggctttttttgagctctgcagatcttcaggctcacagagcaggcacattactg 785
Query: 328 gctcaggtgcctccacagtctgtattttgacagtctcatggtcctaggatagtctttaac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gctcaggtgcctccacagtctgtattttgacagtctcatggtcctaggatagtctttaac 725
Query: 388 agactggagaacacaaggatgacactgaactactggctcccgactgcagtgggaacatca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agactggagaacacaaggatgacactgaactactggctcccgactgcagtgggaacatca 665
Query: 448 ccacatctagtgttagtattgctttctatgcacacaatagcccaaagaacatctggtcac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ccacatctagtgttagtattgctttctatgcacacaatagcccaaagaacatctggtcac 605
Query: 508 atctctgccaccattagtaagccaaggccttagtgtagtaactcatccagacctaag 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atctctgccaccattagtaagccaaggccttagtgtagtaactcatccagacctaag 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
