BAC Information

Click to search

BAC

Clone NameMSMg01-053C12
Chromosome9 (Build37)
Map Location 6,329,895 - 6,330,037
singlet/doubletsinglet
Overlap genePdgfd
Upstream geneCasp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Ddi1
Downstream geneEG664919, LOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053C12.T7 (MSMg01no053_c12.b1)MSMg01-053C12.TJ (MSMg01no053_c12.g1)
ACCAG281453AG281454
length699700
length of high quality
(start - end)
---143 (158 - 300)
definitionCHROMAT_FILE: MSMg01no053_c12.b1 PHD_FILE: MSMg01no053_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:59 2005CHROMAT_FILE: MSMg01no053_c12.g1 PHD_FILE: MSMg01no053_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACAATTTGCGGCGCTAAACGACTCCNATTTCCGAGTCGCCCGCGGAAN
NCCGNCTTTTCGGAACCGGGGANAAGNCAANGNCGNGANGCNGGGACNNN
NCAAAAAAACGCCGGCCCCACGNAGGAGACCNCGACAGAAACANCAAAAG
GGACACNGGCGCCAGCGGACNCCGGGNCCCCCAAGGAGACGAGAGAGGAC
CACGAAACCAGAGGNGNCGCGACGGCCGGAGACAGCCAAGGAACCCGTGT
CTCCGCCACACCCAGCCNGACCCGCCNCGCCCGGCCCCCAACCAAAGAAC
AACNACAACCTGGTACTCTTTTCAAGCCANCAGCCACACACGCAGGCACA
GATTTTTTTTCCCCCCCCCCACCCCTCTTGCTCAGGGTCCTGTATTCTAC
TGGCTCCGGCCCTATAGCACCTCTCTTCCTTTTACCTTCCCCGTGATAAT
ATGAACGGCTCTAGATCGTGACTACAAGATAAACGATGCCAGTGTGTCCT
GTACCCAGCGGTCAAGAACCGATGTCAGTATTGCCGTGACTGTGCGGATA
GCCCTAGTCTGATTCCGCCCCCACCAATGCTCTTCCTTCAAGAGCCCTTT
GCTTACCTTTGTTCCCCGGAAGCCTCTGACCCGATGAAGCGCGGCCACGC
TTTTTTTTTTTTTTTTCCCCGCCACTTTTGAGTTTAAATTCGCTTTATG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTCAGAAATTTTAATAGTAACAAA
TGATAAATGAATTCATTACATTTCAGATAAAATGCAACTTTAGATTCTCT
TAGTTACACAAATACACGGTGTTTAAGAGAAGCCGAGTTCTATATTAAAC
TGTCATCATTTATAAGTAACATATTTAAAATAAGCATACAAAGGGAACAG
CATCATTTATAACAATGAATTTCTGAAGTTTTAGCTCTGAAAGAAGAATT
TTGTCCTAAGAAGGCATTTGTGTGTGTGTGTGTAATATAATTTGTATGAT
ACACGTCAGGGGTTATAGTTTTTCATCTCTAGGACAAATCTGCCTTTAGC
AGGCATGTTCCAGTGGCAACTAGGAGGATGCTATTATTGCATCAGATCCA
TCCTGTCCTCTGCTATAGCTACTCACTGACTGCTTTCTATTACTGGTGGT
GCCTATGTCCAGAGCCTGTGAGAGCTAATTTCTTGTGCCCCTCTTTCCGA
TTTGGAGACCCGCTTTTTCCACTGACTCCCCTATTTCGACGATGATCTCC
TTAGTACCTTCCCGATAGCTTCACACCTTTTGCCCCTTAAATCGTATGCT
GTTGACAGCCTGTAAAGAATTTCCCTCCAATATTCCCTGTACCTGAATCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_c12.g1 MSMg01no053_c12.g1 CHROMAT_FILE:
MSMg01no053_c12.g1 PHD_FILE: MSMg01no053_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:59 2005
         (143 letters)



>mm_chr9_6329695_6330237
          Length = 543

 Score =  230 bits (119), Expect = 2e-65
 Identities = 137/143 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaatacacggtgtttaagagaagccgagttctatattaaactgtcatcatttataagt 60
           |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 343 acaaatacacagtgtttaatagaagccgagttctatattaagctgtcatcatttataagt 284

                                                                       
Query: 61  aacatatttaaaataagcatacaaagggaacagcatcatttataacaatgaatttctgaa 120
           ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||
Sbjct: 283 aacatatttaaaataagcataaaaagggaacagtgtcatttataacaatgaatttctgaa 224

                                  
Query: 121 gttttagctctgaaagaagaatt 143
           |||||||||||||||||||||||
Sbjct: 223 gttttagctctgaaagaagaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)