BAC Information

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BAC

Clone NameMSMg01-053F15
Chromosome9 (Build37)
Map Location 102,636,570 - 102,636,811
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13, Amotl2
Downstream geneEG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053F15.T7 (MSMg01no053_f15.b1)MSMg01-053F15.TJ (MSMg01no053_f15.g1)
ACCAG281590
length717712
length of high quality
(start - end)
---242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no053_f15.b1 PHD_FILE: MSMg01no053_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:14 2005CHROMAT_FILE: MSMg01no053_f15.g1 PHD_FILE: MSMg01no053_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTATCAACAAAATTCAACAGGTGGGTAGAATTCAGAACACACA
AAGACTTCACCAGCAATCCTGCAAGTGACTATGGACTTTGCTGTCTGCCT
TCTGTGTGACTTAGTCTATAGACAGTCACCTTTATATTTCCTGTAGACCA
AAAGAAGGAAGAAATGAATCCCGATGTGCCCAGAAAACCTCCACGTACGT
GTGTGTACATCTGCACATGTGTCCCCCAGAGGAAATGTAGGGGCAGCAAT
ATTTTCTGCTTTCTACTTCTCCATGACCCCATGGGCTCCCTTGTGAGTTT
TCTCGGGGAAGAAACTAAACAGGTTATTCAGCGCTCTGCAATCCTCCCTT
ACTGAGTCAGGAAACAGAAACTGCAGCTGGTGGAGTTGGAGAGGTTCTGA
TAAGAAAGGTATTTGCCTCAGGTGTCTGGACACCTGCATAGGGGTGGTGA
CTGTGCTAGAACCTGGGTGCTCTGCTAGGCCCTTTGGAAACTAAGTTGGT
CAGAGGTGACAATTTATTCTGAGTCCCAACCTTCCTGTCCTGTCCCTTTG
TCCATGATTGACAATTACGCGTTACGCCGGTACTCTGCAAATGCTTTTGT
CCCCTATTATACCATTCCACCCTGCCTTGGCTCTGATCTTCTCCGTTTTT
CTCTCTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_f15.g1 MSMg01no053_f15.g1 CHROMAT_FILE:
MSMg01no053_f15.g1 PHD_FILE: MSMg01no053_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:14 2005
         (242 letters)



>mm_chr9_102636370_102637011
          Length = 642

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgggtagaattcagaacacacaaagacttcaccagcaatcctgcaagtgactatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtgggtagaattcagaacacacaaagacttcaccagcaatcctgcaagtgactatgg 260

                                                                       
Query: 61  actttgctgtctgccttctgtgtgacttagtctatagacagtcacctttatatttcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actttgctgtctgccttctgtgtgacttagtctatagacagtcacctttatatttcctgt 320

                                                                       
Query: 121 agaccaaaagaaggaagaaatgaatcccgatgtgcccagaaaacctccacgtacgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaccaaaagaaggaagaaatgaatcccgatgtgcccagaaaacctccacgtacgtgtgt 380

                                                                       
Query: 181 gtacatctgcacatgtgtcccccagaggaaatgtaggggcagcaatattttctgctttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacatctgcacatgtgtcccccagaggaaatgtaggggcagcaatattttctgctttct 440

             
Query: 241 ac 242
           ||
Sbjct: 441 ac 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)