BAC Information

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BAC

Clone NameMSMg01-053G19
Chromosome9 (Build37)1 (Build37)
Map Location 89,656,510 - 89,656,737174,891,922 - 174,892,169
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik
Downstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053G19.T7 (MSMg01no053_g19.b1)MSMg01-053G19.TJ (MSMg01no053_g19.g1)
ACCAG281644AG281645
length742711
length of high quality
(start - end)
228 (76 - 303)248 (74 - 321)
definitionCHROMAT_FILE: MSMg01no053_g19.b1 PHD_FILE: MSMg01no053_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:20 2005CHROMAT_FILE: MSMg01no053_g19.g1 PHD_FILE: MSMg01no053_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:20 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,656,510 - 89,656,737)(174,891,922 - 174,892,169)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAA
TTCAGAGAAGGTTACATTCCTCCCAATGTCCCCACTTCTGGCTGTTTCCT
TTCTCTACTGTTGTGTTAATTTTTGCTTTTAGAGACCATGGTACACATAT
GCTTCTGATGTACACATATGCTCCTTTACAAAAACCTGGAGATGGCATGT
GGTAACTTACAAAGGATAGAACATTATTTGGGCTCATAATTCCAGAGATT
TGAAGTCAAGGGACCATATATAGTGATGAACATCTTGTTGACAGAACACC
AAGACAGTGGTGAGAGGAGGTTGTTTTGTGCGCTTGCGCCTTTAAGCCAA
CACTAATACTTTTATGCTTTCCCCTCTCCTCCCCTCCCCTTTTCTCTCTG
TCTCAATCTCTTTGATTCCCCCCCCTTTTCTTCTATTCTCTTGCTTTCTC
TTCGTTTTCTTTACCCTTTACCTTCCTTTTTTATTTTTTCTACTGTCATT
TCTCTCTTTTTCTCTTTCCTCATTTACTACTCCTTTTCCCTTTTCCTCTT
CACCCCTTTTTTCCCTTGCCTTTCTATTACCCGTCCTTTTTTCTTTTTCC
ATCTTTTCCCTTCATGCTCCCCTTTATCTCTTATTTATTCCGATTCCTTT
CCTCCTCCTTCTGGATTGTTACTCCCCTTCTTTTATTTCCTCCTCTTAAC
CTCTCTATTTGCCGCTTTTCCCCTTCCCTCCTTTTACCTACG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGAGAGCTGTTGTTATTTCATTAAC
TTTGTGTGGCACTGGGCCAACTGATGTGTGGGAGGGATGAAGAAGGTTGA
ATAAGAGATAGGAAGAGATTAAACAGTGGCACACTAGCCTGAAAAAAAAA
AACAAAATATTAGAACAGAGGCTTCATTCTCCACTGTTGGCCCACTAATA
TGTTAAGTATTAGCTGAGCAAAAGGTGCTTAATAGCCTTCAGAAAGCTGA
GTATGTGAGCACTGACTATAAGAATTTCTCATGCTTCTTAGTAGATATGA
CCTGTCATTTTGCTGTCTGCCTTTTGGATCCCTCTCATCTGAAGTCAATT
AGAAGACAAATGAGTATACCCCCAAATATGTAAACACACTGCGGAAGCGC
TTTTCCCCACTGTAAAATTGTTTACAACATTTACTACTCCCTCACATATT
CGCATACATGAACCCCTTATCATTATCAACACTATTCCTTTAATTCTGAT
TGAACCGTTACCAACATTGCATCGATACGCTTGAACCCTATCCCGCATAC
TCACACTTCACAACCTTTCTTTCTCTGCGTACTTTTACCCTTACCCTCGT
TATTTTTTATTTTGCTCTCTTCTTATATTTTTCCTTTTCCCTCCTATGTT
CTTCTTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_g19.b1 MSMg01no053_g19.b1 CHROMAT_FILE:
MSMg01no053_g19.b1 PHD_FILE: MSMg01no053_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:20 2005
         (228 letters)



>mm_chr9_89656413_89657040
          Length = 628

 Score =  433 bits (224), Expect = e-126
 Identities = 227/228 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtccccacttctggctgtttcctttctctactgttgtgttaatttttgcttttagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtccccacttctggctgtttcctttctctactgttgtgttaatttttgcttttagaga 266

                                                                       
Query: 61  ccatggtacacatatgcttctgatgtacacatatgctcctttacaaaaacctggagatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatggtacacatatgcttctgatgtacacatatgctcctttacaaaaacctggagatgg 206

                                                                       
Query: 121 catgtggtaacttacaaaggatagaacattatttgggctcataattccagagatttgaag 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 catgtggtaacttacaaaggataggacattatttgggctcataattccagagatttgaag 146

                                                           
Query: 181 tcaagggaccatatatagtgatgaacatcttgttgacagaacaccaag 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tcaagggaccatatatagtgatgaacatcttgttgacagaacaccaag 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no053_g19.g1 MSMg01no053_g19.g1 CHROMAT_FILE:
MSMg01no053_g19.g1 PHD_FILE: MSMg01no053_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:20 2005
         (248 letters)



>mm_chr1_174891722_174892369
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagagctgttgttatttcattaactttgtgtggcactgggccaactgatgtgtggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagagctgttgttatttcattaactttgtgtggcactgggccaactgatgtgtggga 260

                                                                       
Query: 61  gggatgaagaaggttgaataagagataggaagagattaaacagtggcacactagcctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggatgaagaaggttgaataagagataggaagagattaaacagtggcacactagcctgaa 320

                                                                       
Query: 121 aaaaaaaaacaaaatattagaacagaggcttcattctccactgttggcccactaatatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaaacaaaatattagaacagaggcttcattctccactgttggcccactaatatgt 380

                                                                       
Query: 181 taagtattagctgagcaaaaggtgcttaatagccttcagaaagctgagtatgtgagcact 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 taagtattagctgagcaaaaggtgcttaatagtcttcagaaagctgagtatgtgagcact 440

                   
Query: 241 gactataa 248
           ||||||||
Sbjct: 441 gactataa 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)