BAC Information

Click to search

BAC

Clone NameMSMg01-053L09
Chromosome9 (Build37)
Map Location 102,771,422 - 102,771,686
singlet/doubletsinglet
Overlap geneRyk
Upstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13, Amotl2, EG434510
Downstream geneSlco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053L09.T7 (MSMg01no053_l09.b1)MSMg01-053L09.TJ (MSMg01no053_l09.g1)
ACCAG281852AG281853
length7131,483
length of high quality
(start - end)
275 (39 - 313)---
definitionCHROMAT_FILE: MSMg01no053_l09.b1 PHD_FILE: MSMg01no053_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:42 2005CHROMAT_FILE: MSMg01no053_l09.g1 PHD_FILE: MSMg01no053_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAA
TTCACTGTCACATTGAGCTGCATTAGAATCATGACTTCAGAGTCGACTTT
GCCGGTACAAGAAAGCTCGACCCGAAACACTGTTAAAAGAAACAAGAGAA
AACACTTTAGTGTCCTAAAGATTAGGATCAATGCTATACAACATTTTCAT
CTATTTCTGCTCAAATAAAATAAACAAGCGCATCTAAATAAGCGGATCAG
ACTAGAGCTTCTGGAGACCCCGTCACCACCGCTCTGGACACCTGCATTTC
TTTCACTGCAGTGCTGACCATACTGTGTGGACTGCGGTCTGCAGGGCAGA
CATGAGCTACCTGAAATAAATCATGCCATCATCGTATTCTATGGAGGGAA
AGCCTTTCCTGCTGTCTGGCTAACAAAATGTAGGGAAACCAAAGCTGCAC
TGATCTGGTTGCCAGATAGTTCTTGTTGCACTTGAAGCCTCGCCTTAACA
TATGGCCTCTAATACTTGTCAGTACACCACCCATATCTTCTATATCTTCA
CCATGACCTGACCGGTGTATTGATTGCCCTATATTTACCCTCTGTGTATT
ATGCCTAAGCCATACGTGTTACCAGAAATCCCTATTTATAAACTGTCTCT
CCCCCTGTACACATGATCCCATTGTTCCTACCCCTGACAGTCCTCTTTAA
CCTTCGTAACCAN
TATCTAATTTATCNCTCNCTGCTCCNNTNNNCNCNNNNNNNCAAAAAGGC
CNNCCCCNANAACGTACCCTNTAAGCNCGAGGAGAGTNGANNTANNNNNN
ANNNNNNNNNNNNATCTATCTTTACCATATACAAAACGCGAGCCGGATGN
NNNCGNGATCNGTAAGCGATANNAGTATTNACTCTCTATCTCTCNCCCNC
ATTCATCTATCTATACACGATATCCTCGTATATANNCCCCCCAACACTCA
TCTCTCGGACTACTAGTTTGTNCTAAGTTTGCTGTCGATACGCATCGCGT
CGCGTACGACGTACGACTGAGGCGCACGACCTAGATGCGTCTAGCGCAGC
TGCTAGTATCACGGCATGACGAGAGTNGCGCGGCGCTGATGTTTCTACGG
GCGACGCGCTCAGCGTNTACCATAACACACTATATATATNTACACNANAT
TTATATATGAAGCGATACATATAAAGCGCATTCGNACAAACGANCATTAC
GGACTNATGTGAATGACACTGATTGATACATCTCAGTCGCTAGAGTGATT
ATCACACGCTTGNCGTAGCGGCGGACGTGACGCACGCATATCGTAAACAT
CCGACTCTACACTCTCGTTATACTGACGGCACGACGCACGCTGCACTGAG
AGGACGTGTATGTAGTTCGTCGTCTCGTATCATGTCGCGACACGCTGACG
CGTGCGCACACACATGTGTGCGTAAGACGCGCCAGTATGCGTCGCATCGC
GGATATATGGCTGTCACGTACAGCTCGNGTTAGAGCGACGCGACGACGAC
TCGCGCGATGGAGNCGATAAANTATACTTCTGCGGGTGTGTTCGATATCA
NGATCGCACGGTACCGCGCCTCTGCGCACATCCGGATCGCTGGGGCGCGC
GTGGGAGTGACGCAATATCTACGTCGCGGCGCGTGATGATATACGNCGCG
GNGCGGTGCGGACGTCGTCCTGATAGGCTCGCGTGCGTGAGTCTGTCGTG
GCGCGGCGCTANGNCGCGTATAATTNTCTGTCGCTCTCACCTGTATGTGA
TCGCGCGTCCGCGGTCGCCGGTANCGTGGAGCCTAGGTGAGCGAGTGAGG
CTGCGCGNAGGCGACGCGATCGCGGAGATACGGANTATACGTATAAGCGC
TGGGCGCGGCGCAGGCGAATGAGCGTAGAACGATGATGCTGNGCGGCGAA
TGATGGGACGAGGCGGTCGTCGCGGCTGAGTCGGTAGTAATGCGATATGA
TATATNGCGGCGTAATGTGCGATATATCGCGCGTATGCGCGGGCGCAAAN
TATGCGCGCGCNGATGTATATACTGTCGTCGACATATAATATATGGTAGT
ATGTGAGCCGACGCGCGAATGATGAACACGGTTCGATAAGGACCTGCGCA
GAAGTCTCGAATACGCGACGTCAGACGTGNAGTCTTACATGCGACGGCGA
TGGAGTACGTTGCGGCCTGGGCGACGCGCGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_l09.b1 MSMg01no053_l09.b1 CHROMAT_FILE:
MSMg01no053_l09.b1 PHD_FILE: MSMg01no053_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:42 2005
         (275 letters)



>mm_chr9_102771214_102771888
          Length = 675

 Score =  460 bits (238), Expect = e-134
 Identities = 259/266 (97%), Gaps = 2/266 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   ggaattcactgtcacattgagctgcattagaatcatgacttcagagtcgactttgccggt 68
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggaattcactgtcagattgagctgcattagaatcatgacttcagagtcgactttgccggt 414

                                                                       
Query: 69  acaagaaagctcgacccgaaacactgttaaaagaaacaagagaaaacactttagtgtcct 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acaagaaagctcgacccgaaacactgttaaaagaaacaagagaaaacactttagtgtcct 354

                                                                       
Query: 129 aaagattaggatcaatgctatacaacattttcatctatttctgctcaaataaaataaaca 188
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 353 aaagattaggatcaatgctatacaacattttcatctatttctgctcaaataaaataaaga 294

                                                                       
Query: 189 agcgcatctaaataagcggatcagacta-gagcttctggagaccccgtcaccaccgctct 247
           |||||||||||||||||||||||||| | ||||||| |||||||| ||||||||||||||
Sbjct: 293 agcgcatctaaataagcggatcagac-aggagcttccggagaccctgtcaccaccgctct 235

                                     
Query: 248 ggacacctgcatttctttcactgcag 273
           ||||||||||||||| ||||||||||
Sbjct: 234 ggacacctgcatttccttcactgcag 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)