BAC Information

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BAC

Clone NameMSMg01-054A07
Chromosome9 (Build37)
Map Location 30,669,673 - 30,670,052
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054A07.T7 (MSMg01no054_a07.b1)MSMg01-054A07.TJ (MSMg01no054_a07.g1)
ACCAG282069AG282070
length774775
length of high quality
(start - end)
---379 (130 - 508)
definitionCHROMAT_FILE: MSMg01no054_a07.b1 PHD_FILE: MSMg01no054_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:06 2005CHROMAT_FILE: MSMg01no054_a07.g1 PHD_FILE: MSMg01no054_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNGGGGNAAAAAANNAAAAACNCCCAAGGGCAAGAAGATGTTGTG
TAATTAAAATTGCAGGGCGAAAGGAGTNAGATTACTGAGNNGAAGGNGNG
AANNNNNAGTTTACCATGAGGGAGGGGNNGAAANGNNNNNGAGGNNNNNA
GAGANNNGGGGGAATATGAACCCCANAGAGAAAAAAAAAAAAGAAAGAAG
AAAGAAGNNAAGANGGGGAGAGAAGAGGGGAAGAGAGNGAAGGAAGGAAA
AGAGAGAGAAGGAAGAAGGAGAGGAGAGGGAGAAGGAAAGANAATAAAGA
GTGGGTAGAGATGTGTGTTATATTTGATTTAAAAATATGATTTTGATGAA
GATGGAAATGTAGTGTTTTTTTTTTTGATGTTGGTTTAAATTTGGTTTAA
TGGGGTAAATGGTTGTACACAGGAAAGATTTTTTATATATTCAAATGAGC
AGAATAATTGGCTTCTGACTTTATAATGAGGAAGTAAAACTTTCTGTAAA
GAAGTCAAAGAGTTAGTCATGATTCAAGTGTGTAGAATTCGAGATTAAAA
AGGTGAGAAAATAAATTAATTATAGGAAAGAGAAAGGAGAGGGTAAGGAT
GAAGAAAGAAATTTTATTATTAAATGGGTGGGGCTGGGATCCAAGTCTGA
TTTTTTAAAAAAAGGGGTTAAATAATGAATTATGAAAATTAAGAAAAGGA
TTTGAGGAATGGGTATAAAGGAAGCGTTTTCCGGGAAAAGAATGACGAGG
AAATTTTATTTTAAATGAAAATGG
NNNNNTTTTNNNNNNNNNNCCCCCCCCCCCCCCCCCTCCCCAGCTTTTTT
TTTTTTTCTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTTCCGAGAAATTCTCTACCGAAATCATCT
GGGTCTAAAGACTGTCTTTCCGGAATGTTAAAATCACAAATTAAATTTTC
TTAATAGTAATAGAATTATTCAAATTACATGTTTGTACTGGGTGAATTAT
GACAGCTTTGGTCTTTCTCAGAACTGGGCCTCTTCATGTAAGTCATCAGA
TGTGTGCAGATGGAGTTGTGTGAGGCAGAGTTGTGGCACTCTGGGTTGCT
TTCCTTATGTCAGNAATTTGTGATTTTACTCCTTTTTAATGTGTCAATCT
TAAAAGTTTGCAGCTTTGTGTATTTGCTGAACAACAGGCTTTTTGCTTCA
TTAGTTTTATCAATTCTGTGGACCTATGTTCTTGTCCTTATTTACTCCCT
TCTTACAGCTCACATCTGTGATGTCCTCAAGTGTCCCTTGTGCTGAACCA
TATTTTTCAGCTTGGTTGGTGCATTGAGACGCGATGATACTTACTAATGT
CTAGTATTAGATTTCAGGTCATGTGAAGGGTGTGCACTTCTAAGTAATTA
CAGGACACCAATTTACTTGTTCTCTCTCTCTATCGCCCTCCCACAACAGC
TCATCCCTCTTATCCCCCTCACTCCTTGCACATCCTCGCTTCTATCTTGT
TATTTTTATATTAATATACTTAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_a07.g1 MSMg01no054_a07.g1 CHROMAT_FILE:
MSMg01no054_a07.g1 PHD_FILE: MSMg01no054_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:06 2005
         (379 letters)



>mm_chr9_30669283_30670062
          Length = 780

 Score =  652 bits (337), Expect = 0.0
 Identities = 369/380 (97%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctctaccgaaatcatctgggtctaaagactgtctttccggaatgttaaaatcacaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aattctctaccgaagtcatctgggtctaaagactgtctttccggaatgttaaaatcacaa 711

                                                                       
Query: 61  attaaattttcttaatagtaatagaattattcaaattacatgtttgtactgggtgaatta 120
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 710 attaaattttcttaatagtaataggattattcaaactacatgtttgtactgggtgaatta 651

                                                                       
Query: 121 tgacagctttggtctttctcagaactgggcctcttcatgtaagtcatcagatgtgtgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgacagctttggtctttctcagaactgggcctcttcatgtaagtcatcagatgtgtgcag 591

                                                                       
Query: 181 atggagttgtgtgaggcagagttgtggcactctgggttgctttccttatgtcagnaattt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 590 atggagttgtgtgaggcagagttgtggcactctgggttgctttccttatgtcagtaattt 531

                                                                       
Query: 241 gtgattttactccttttt-aatgtgtcaatcttaaaagtttgcagctttgtgtatttgct 299
           ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 530 gtgcttttactccttttttaatgtgtcaatcttaaaagtttgcagctttgtggatttgct 471

                                                                       
Query: 300 gaacaacaggctttttgcttcattagttttatcaattctgtggacctatgttcttgtcct 359
           ||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 470 gaagaacaggctttttgcttcattagttttatcaattctgtggatttatgttcttgtcct 411

                               
Query: 360 tatttactcccttcttacag 379
           ||||| ||||||||||||||
Sbjct: 410 tattttctcccttcttacag 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 780
Length adjustment: 9
Effective length of query: 370
Effective length of database: 771
Effective search space:   285270
Effective search space used:   285270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)