BAC Information

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BAC

Clone NameMSMg01-054E10
Chromosome9 (Build37)
Map Location 112,540,060 - 112,540,549
singlet/doubletsinglet
Overlap genenone
Upstream geneStac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054E10.T7 (MSMg01no054_e10.b1)MSMg01-054E10.TJ (MSMg01no054_e10.g1)
ACCAG282258AG282259
length758705
length of high quality
(start - end)
285 (126 - 410)514 (72 - 585)
definitionCHROMAT_FILE: MSMg01no054_e10.b1 PHD_FILE: MSMg01no054_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:25 2005CHROMAT_FILE: MSMg01no054_e10.g1 PHD_FILE: MSMg01no054_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGTGTGGTGTTGGGTTTNNNNCCGCCCCCCCACCTCTCCTCCGTGCGC
NNNGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAGAGGAT
CCGCGGAATTCTTTTTTTCTTTAGATATAAGTCCTCTATCAGATGTGGGG
TTAGTGAAAATTTTTTCACAATTTGTAGGTTGCCGATTTGTCTTATTGAC
TATGTACTTTGCCTTACAGAAGCTTTCCAGTTTCCTGAGGTCCCATTTAT
CAATTTTTGATCTTAGAGCATGAACCACTGGAGTTCTGTTTAGGAAATTT
CCCCTTGTGTCAATGAGTTCAAGACTCTTTACCACTTTCTTTTCTATTAG
ATTCAGTGTATCTGGTTTTATTTTGAGGTCCTTTATCCACTTGGACTTGA
GCTGTGTACAAGGTGACCCCTATGGCCCTATTTTCATTTTTCTATATACA
GACATTCAGTTAGACTAACCCTCTTTATTGAAGATGTTTTCTTTTTTCTA
TTGTATATTTTTGGCATCTTTGTCAAAGAGAAAGTGTCCATAAGTGTGTG
ATTTTACTTCTGGGTCTTTAATTCTATTCCATTGATCAACCTGCCTGTCT
CTGCGATAATACCATGCAGTTTTATCACTATTGCTCAGTATTAAAGCTTG
AGGTCAGGGATGGTGATTCCCCCAGTTTTTCTTTTATTGTGAGGAATTAT
TTGTTTTTATTCTGGGTTACCCCCAGATACAGTCCACAAGAACTCTAACA
GCGTCAAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCCCGCGAAATTCATATCATGATTTTGATAACATCTCT
CACCTCTTTGTACTCCTGAATAATTTGAGTGGTTATTCCAGGAATGTTGA
CATATAATCATCATGTACTAAGATTTATTTCAGGGAGTTTTGTCATTATG
GATTCAATCTCCTTTCTAATTATTTATTTGTTTATGCTATTTATATTCTC
TTGATTTAATTTTGATTGGTGCAGGAATTTATTCTTTTTTATCCACAACA
ATTTCCAGTTTGAAGAATATTTGTCTTTAAAATATTGCTTCATAATCACA
AGGTTTTGTTGGTTCCAGGTAGACTACTAACTTTTCTTCTTTAATAGCAT
CAGGGTAGGTGCTCCCTCCCTCATTCTCTGCCTCTGCCTTCTCTCTCATT
TCCTTAGTTTATCTAAGAGCTTGTTAACCTTGTCTGTCTTTGGATTTGGT
AACTGAGGAGTTAATATACTTTAGTGGAGGCATGCCTTGCTTTTCATGTT
TTTTGTTTGATTTTTTGTTTGTTTGTTACTATGTTGTGTCTTAGACATCT
ATTGGATGGATATTTCTTATAATTTTATTTGGGTAACTCAGCAAAACAGT
TCTCACATTTGCTGGGCCCGCAAAGGTGCTTTCTGCCATCCTGACTAGCT
GAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_e10.g1 MSMg01no054_e10.g1 CHROMAT_FILE:
MSMg01no054_e10.g1 PHD_FILE: MSMg01no054_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:25 2005
         (514 letters)



>mm_chr9_112539641_112540555
          Length = 915

 Score =  886 bits (458), Expect = 0.0
 Identities = 482/490 (98%), Gaps = 2/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatatcatgattttgataacatctctcacctctttgtactcctgaataatttgagtg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 909 attcatatcatgattttgataacatctctcacctctttgtactcttgaataatttgagtg 850

                                                                       
Query: 61  gttattccaggaatgttgacatataatcatcatgtactaagatttatttcagggagtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gttattccaggaatgttgacatataatcatcatgtactaagatttatttcagggagtttt 790

                                                                       
Query: 121 gtcattatggattcaatctcctttctaattatttatttgtttatgctatttatattctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtcattatggattcaatctcctttctaattatttatttgtttatgctatttatattctct 730

                                                                       
Query: 181 tgatttaattttgattggtgcaggaatttattctttttt-atccacaacaatttccagtt 239
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 729 tgatttaattttgattggtacaggaatttattctttttttatccacaacaatttccagtt 670

                                                                       
Query: 240 tgaagaatatttgtctttaaaatattgcttcataatcacaaggtttt-gttggttccagg 298
           ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 669 tgaagaatatttgtcttcaaaatattgcttcataatcataaggtttttgttggttccagg 610

                                                                       
Query: 299 tagactactaacttttcttctttaatagcatcagggtaggtgctccctccctcattctct 358
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 609 tagactactaacttttcttctttaatatcatcagggtaggtgctccctccctcattctct 550

                                                                       
Query: 359 gcctctgccttctctctcatttccttagtttatctaagagcttgttaaccttgtctgtct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gcctctgccttctctctcatttccttagtttatctaagagcttgttaaccttgtctgtct 490

                                                                       
Query: 419 ttggatttggtaactgaggagttaatatactttagtggaggcatgccttgcttttcatgt 478
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttggatttggtagctgaggagttaatatactttagtggaggcatgccttgcttttcatgt 430

                     
Query: 479 tttttgtttg 488
           ||||||||||
Sbjct: 429 tttttgtttg 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space:   456120
Effective search space used:   456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)