Query= MSMg01no054_h20.b1 MSMg01no054_h20.b1 CHROMAT_FILE:
MSMg01no054_h20.b1 PHD_FILE: MSMg01no054_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:41 2005
(473 letters)
>mm_chr9_121393534_121394406
Length = 873
Score = 768 bits (397), Expect = 0.0
Identities = 448/473 (94%), Gaps = 14/473 (2%)
Strand = Plus / Plus
Query: 10 gaattcatatgtatcctaagtgcccatgggtgccgtttctattcaaacaaccacagtggc 69
||||||||||| |||| ||||||||| ||||||||||||||||| |||||||| ||
Sbjct: 215 gaattcatatg-----taagggcccatgggggccgtttctattcaaaccaccacagtcgc 269
Query: 70 ttctcagtgctgaatgcctgataagttgctgagtacaggaagaagacaggtgatcgtctg 129
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 270 ttctcagtgctgaatgcctgataagttgctgagtacaagaagaagacaggtgatcgtctg 329
Query: 130 ttgcagtgaagaaagcaaggcggtggagggggttagcgggctggtggctctcatcctggt 189
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttgcagtgaagaaagcaaggtggtggagggggttagcgggctggtggctctcatcctggt 389
Query: 190 ggagcaaggaaggggtatgtagtgcctgactggcttccttcttcctctcttactcagcct 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggagcaaggaaggggtatgtagtgcctgactggcttccttcttcctctcttactcagcct 449
Query: 250 ggaatcccagtgcatgcgcgaataccacaacattcagggtaggttctcttcaatgttaag 309
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 450 ggaatcccagtgcatgtgcgaataccacaacattcagggtaggttctcttcaacgttaag 509
Query: 310 ttaatactctttggaaagtccttttattaatattgtcatcattatcatcatttaagcttg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttaatactctttggaaagtccttttattaatattgtcatcattatcatcatttaagcttg 569
Query: 370 tctatagacaattttgcacatgtgcacaatgtttgccagtcactcttactcccccactga 429
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 570 tctatagataattttgcacatgtgcacaatgtttgccagtcactctcactcccccactga 629
Query: 430 ---------tggctgtggtctcggatgaatcagttcccaggtcggccactggg 473
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 630 aggctctgatggctgtggtctcggatgaatcagttcccaggttggccactggg 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_h20.g1 MSMg01no054_h20.g1 CHROMAT_FILE:
MSMg01no054_h20.g1 PHD_FILE: MSMg01no054_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:41 2005
(547 letters)
>mm_chr9_121547903_121548845
Length = 943
Score = 978 bits (506), Expect = 0.0
Identities = 533/544 (97%), Gaps = 4/544 (0%)
Strand = Plus / Minus
Query: 1 caactccatccataggttggagggtcgcagggaggcctgagcagatcctcaaagaatatt 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 740 caactccatccataggttggagggtcgcagggaggcctgagcagatgttcaaagagtatt 681
Query: 61 cttttgttctttcttttgctcacctctctcttatctatcaccacgcctggccctgtggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttttgttctttcttttgctcacctctctcttatctatcaccacgcctggccctgtggtg 621
Query: 121 aggctaggcttgtcactgatggaaacatgaactgtgaaaaccctagaattgcttgagcag 180
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 620 aggctaggcttgtcactgatggaaacatgaactgt----accttagctttgcttgagcag 565
Query: 181 aagatagagggatcttgtagccccacttaggagctaagctcatggaactcagggtaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagatagagggatcttgtagccccacttaggagctaagctcatggaactcagggtaggag 505
Query: 241 acgccttgaaatgactcgtggacgtagcagtggaactcaaggcccagacatgagatagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acgccttgaaatgactcgtggacgtagcagtggaactcaaggcccagacatgagatagtt 445
Query: 301 tccctggttcctgaaggccggggccaagagctctggggagggctggttcctgacataagt 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 tccctggttcctgaaggccggggcctagagctctggggagggctggttcctgacataagt 385
Query: 361 gtcatctcaggtgaacattgagtgaacagacactgagatgggtcttggagaatggaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcatctcaggtgaacattgagtgaacagacactgagatgggtcttggagaatggaattt 325
Query: 421 tattgcctggtgaacagtaaaggaaagaaggcagggtgtgggtgagctcttcaggctaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tattgcctggtgaacagtaaaggaaagaaggcagggtgtgggtgagctcttcaggctaca 265
Query: 481 cttcagagacgaaaacaagatttcctcttcactccccaccacccctttctttgacagagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttcagagacgaaaacaagatttcctcttcactccccaccacccctttctttgacagagt 205
Query: 541 ctca 544
||||
Sbjct: 204 ctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 943
Length adjustment: 10
Effective length of query: 537
Effective length of database: 933
Effective search space: 501021
Effective search space used: 501021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
