Query= MSMg01no054_j12.b1 MSMg01no054_j12.b1 CHROMAT_FILE:
MSMg01no054_j12.b1 PHD_FILE: MSMg01no054_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:49 2005
(598 letters)
>mm_chr9_53022388_53023386
Length = 999
Score = 934 bits (483), Expect = 0.0
Identities = 564/597 (94%), Gaps = 15/597 (2%)
Strand = Plus / Minus
Query: 10 gaattctctgttaccctcttatgaatacatataaaatcctatattatgacaacccctgct 69
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 gaattctctgtcatgctcttatgaatacatataaaatcctatattatgacaacccctgct 916
Query: 70 ccccaccttcccctaagacagggtttcttgtatagtcttggctctcctggaactctgtag 129
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 915 ccccaccttcccctaagacagggtttcttgtatagtcttggctgtcctggaactctgtag 856
Query: 130 accaggctggccttgaattcagagatcctctgcctcctgagtgctggcattaatacctgt 189
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 855 accaggctggccttgaattcagagatcctatgcctcctgagtgctggcattaataactgt 796
Query: 190 ttttataggcactcagctttgttagtagc--gggcagaatgtctgttttctcaccatttc 247
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 795 ttttataggcactcagctttgttagtagcaagg--agaatgtctgttttctcaccatttc 738
Query: 248 agcacctggcatatcaataagattttaaaaaattagctttagtaaaacagcttaacattt 307
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 737 agcacctggcatatcaataagattttaaaaaattagctttagtaaaacaggttaacattt 678
Query: 308 gggtatattttattt-----aatctttttttagtctgtgcatacaaggaatgcatatatt 362
|||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct: 677 tggtatattttattttatttaatctctttt-agtctgtgcatacaaggaatgcatatatt 619
Query: 363 tttttccttattaaaatagagttttaaaattaatatgcaagataaaatgctttcctttag 422
||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 618 tttttccttattagaatggagttttaaaattaatatgcaaggtaaaatgctttcttttag 559
Query: 423 ttgttacaataaaaaattctcttagttaaagccagtttttctttcagcattcagtgataa 482
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 558 ttgttacaataaaaaattctcttagctaaagccagtttccctttcagcattcagtgataa 499
Query: 483 aatgctatatgtagacagtgttgtggaatctctgcagaggcattcaaggcagtc-caatc 541
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 498 aatgctatatg----cagtgttgtggaatctctgcagaggcattgaaggcagtggcaatc 443
Query: 542 aggctctaagcacctttttagtcatctttgttgctgttcatttttgtactcctgctg 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aggctctaagcacctttttagtcatctttgttgctgttcatttttgtactcctgctg 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 999
Length adjustment: 10
Effective length of query: 588
Effective length of database: 989
Effective search space: 581532
Effective search space used: 581532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_j12.g1 MSMg01no054_j12.g1 CHROMAT_FILE:
MSMg01no054_j12.g1 PHD_FILE: MSMg01no054_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:49 2005
(559 letters)
>mm_chr9_52863190_52864148
Length = 959
Score = 1050 bits (543), Expect = 0.0
Identities = 555/559 (99%)
Strand = Plus / Plus
Query: 1 attgcaaagtcagctcagagggtccatttagcatctgtgcttcctttttaccaacggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgcaaagtcagctcagagggtccatttagcatctgtgcttcctttttaccaacggctg 260
Query: 61 cagggtatccgtgcagcttcacactgatctgaatcagatatgaaggcactacattctccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggtatccgtgcagcttcacactgatctgaatcagatatgaaggcactacattctccc 320
Query: 121 aaaaaggtccttgagaagcatccatagccaagctaaaaggagtaagcacaaaaggccaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaggtccttgagaagcatccatagccaagctaaaaggagtaagcacaaaaggccaat 380
Query: 181 tccaggcacaggctgtgacaagaggagtaagtgctaggcagaatcccacacatgttccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaggcacaggctgtgacaagaggagtaagtgctaggcagaatcccacacatgttccct 440
Query: 241 cacctgacagtcagaggcttccttgcctacctactggaccatctggagagtgaatagact 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacctgacagtcagaggcttccctgcctacctactggaccatctggagagtgaatagact 500
Query: 301 gcttcctaaggagccataccagaagaaagcattggtgctgttgtcatgtgccccctaccc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gcttcctaaggagccataccagaagaaagcattggtgctgctgtcatgtgccccctaccc 560
Query: 361 ccaccccaaacgctggtagggacatctatttcagccctggcaggtttcagaagacacact 420
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaccccaaacgttggtagggacctctatttcagccctggcaggtttcagaagacacact 620
Query: 421 ccttcacattcccatctctttttatagctcccattagtaacaagaggcatcagggtgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttcacattcccatctctttttatagctcccattagtaacaagaggcatcagggtgatt 680
Query: 481 aaagtagtgttactattagcagtgtctcattgacttatgacagcacaaacagaagacaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagtagtgttactattagcagtgtctcattgacttatgacagcacaaacagaagacaca 740
Query: 541 tcttaggatctagttaatg 559
|||||||||||||||||||
Sbjct: 741 tcttaggatctagttaatg 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
