BAC Information

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BAC

Clone NameMSMg01-055E03
Chromosome9 (Build37)
Map Location 21,370,226 - 21,370,639
singlet/doubletsinglet
Overlap geneCarm1
Upstream gene2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611
Downstream geneYipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055E03.T7 (MSMg01no055_e03.b1)MSMg01-055E03.TJ (MSMg01no055_e03.g1)
ACCAG282974AG282975
length809704
length of high quality
(start - end)
---418 (76 - 493)
definitionCHROMAT_FILE: MSMg01no055_e03.b1 PHD_FILE: MSMg01no055_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:37 2005CHROMAT_FILE: MSMg01no055_e03.g1 PHD_FILE: MSMg01no055_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCCCTACCCACTCCTNNATCTNAACCTCCGCGNAANCCNCNNCTGTT
CCAAAAAACCCCCTCCCNGAACGCNGNNNNCTANGNGNCTCNACCCCCCC
CNNACTCCCCACCCAACCAANGACCCNGCACAACCCCCCCACCCATTCTG
CCNCCGNACANCCCCACCACCCCTACCAACNGCCCCTATTGCCNNCTCCC
NGNTNNCCCACCCCCGCCCCCCAAACCCAACCCCAAAAAACCTCTTTAAC
ACCCCCCCCCNAACCCCNCACCCNNNCCCCCCCCCCTTCCCAAACCCCCA
CCNNCNNATTTTTTTTCCACAAAAAACCCAAACAAATCCCTTCCCAACAA
TTTTTTCCCCCCCCCCACCTTCCCNNNCNCCCCCCCCNNNNNNNNNNNCC
CCCNNCCCCACACAAACCCCCCCCCCCCCCCCCNCCAATATCCTATTTTT
TTTTTCCCCGGNNCCCNNANNNNCCCCCCCCCCCCCTCTTCTTTATTATA
ATTAAAAAAAATCTCCCCCCCCTCCCCCCCCCCCCNCCCCCCCTTCTCCT
CTCTACCCCCCCCCNNNNTTTTTNTCCCTCCACTTTATATTTTTTTTTTT
TTTTTTCTTNNCCCCCCCTCCCCCCNCCCTCGGCCCNNNNNNNNTNCCCT
TTCCCCNCCCCCCCCNTTCCTCTTTCTTTATCTCTTTTTTTTTTTCCGCG
CCNCCCCCCCCCCNACACCTCCCCTCTTCTTCTTCCCCCCCCTCTTTCTT
TCACATTATTCCCCTTCCCCCCTTTTTCTCCCTCCCTTTTCTATTTTTTT
TTTTATTTT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGACCAGGCTAGCCTCGA
ATCACATGTACTACCATGCTTAGCCTTCTCCTCTCCATTTAAAAAAAAAA
AAAAAGTTTTTNTGAGATAGGATCTCACTCTATAGTCCACAGTAGCCTGG
AATTCATTTATGCAGCCCAGGCTGACCTTGAACTCACCTCAGCCGTCCTG
TCTTAGCTTCCCAAATGGTGGGTTTAGGGAGTGAGTCATCACCTGAGTCC
TTTCTTGGATTATCCCATCCTGTATCTCTTTTCTGTTCCACATTTCATAA
CCTGAGGCAACCATGGAAAAGAAGGCTGGGTTGGTTTGTGGCAGATCATA
CCCTGGAGCTTTTCTGAAACCTGGGGTTGCAAGCTTCTGCTGTAGCTCCC
TCACCAGTGGTTGCATTGACATTGCAGGGAACATTTACCTGCTTGAAGGA
TCTACGGGCATTTTCTTCATCTGCAGCAGGCCTGTGGTTATAGGGATACT
TTAATGCTACTTCTTCATGTAGGCTCCACGTGCTCCTCATAGGACCCTTG
TTTTGCAGCTCTATCTTTATGGCATGGGATGCCTTCTCTATCTAGCCATA
GGATTGCCCTGGACCCATTTCTATAACGGACGCGGCACAGGTGCAGTCTA
TGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_e03.g1 MSMg01no055_e03.g1 CHROMAT_FILE:
MSMg01no055_e03.g1 PHD_FILE: MSMg01no055_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:37 2005
         (418 letters)



>mm_chr9_21370022_21370839
          Length = 818

 Score =  754 bits (390), Expect = 0.0
 Identities = 410/418 (98%), Gaps = 4/418 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtagaccaggctagcctcgaatcacatgtactaccatgcttagccttctcctctc 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 actatgtagaccaagctagcctcgaatcacatgtactaccatgcttagccttcttctctc 264

                                                                       
Query: 61  catttaaaaaaaaaaaaaaagtttttntgagataggatctcactctatagtccacagtag 120
           |||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 cattt---aaaaaaaaaaaagttttt-tgagataggatctcactctatagtccacagtag 320

                                                                       
Query: 121 cctggaattcatttatgcagcccaggctgaccttgaactcacctcagccgtcctgtctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggaattcatttatgcagcccaggctgaccttgaactcacctcagccgtcctgtctta 380

                                                                       
Query: 181 gcttcccaaatggtgggtttagggagtgagtcatcacctgagtcctttcttggattatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttcccaaatggtgggtttagggagtgagtcatcacctgagtcctttcttggattatcc 440

                                                                       
Query: 241 catcctgtatctcttttctgttccacatttcataacctgaggcaaccatggaaaagaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcctgtatctcttttctgttccacatttcataacctgaggcaaccatggaaaagaagg 500

                                                                       
Query: 301 ctgggttggtttgtggcagatcataccctggagcttttctgaaacctggggttgcaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ctgggttggtttgtggcagatcataccctggagcttttctgaaacctggggctgcaagct 560

                                                                     
Query: 361 tctgctgtagctccctcaccagtggttgcattgacattgcagggaacatttacctgct 418
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tctgctgtagctccctcaccagtggctgcattgacattgcagggaacatttacctgct 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)