BAC Information

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BAC

Clone NameMSMg01-055N09
Chromosome9 (Build37)
Map Location 41,191,318 - 41,191,907
singlet/doubletsinglet
Overlap genenone
Upstream geneGramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
Downstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1, Sc5d, Tecta
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055N09.T7 (MSMg01no055_n09.b1)MSMg01-055N09.TJ (MSMg01no055_n09.g1)
ACCAG283397AG283398
length701723
length of high quality
(start - end)
593 (43 - 635)269 (77 - 345)
definitionCHROMAT_FILE: MSMg01no055_n09.b1 PHD_FILE: MSMg01no055_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:21 2005CHROMAT_FILE: MSMg01no055_n09.g1 PHD_FILE: MSMg01no055_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCCTCTACCTGCTTCTCTGGGTACAGATTTAGAAATGAGGTGGTATG
GAAATTAGTCACCCCATAGCTGCTGAAAAGAAGTTTGTAGGAAGGTAATA
AGAGGCATTCTCAAATGAACATCCAGTCCTTCACAGTGTGAGCAACATCG
CAGGGTCTTACCCCTCTGCCCTTGGGAGCCTCTCGTCCCATCTACCTAAG
CCTCTGAGAAGAAAAGACTGAAGTGGTACCCAGCAGAAACACCAGCATCA
CTGGCCAGTGAAGCCAGGTTGCCTAAGCATAAACTAAGAAATTAAAGATA
AGTAAGTGTATTTTATTCAGTCTGTTGAAGGAAATCCATCATTACTGTGC
AAAGTCACTTGGCAGTGATAATCTAACTCATCTTTCCGCTTTCCCTCCCT
GGTATAAATACATATACATAAAGTATATGGTATACATACAGGGAAACTGG
GGGGTTCAGTGGAGTTTTGGCTTACCCACAATTAAGTAACACGTGGTGAT
GGGCTGGGGAGATGGGACCTTATGTGAAATTCTGGACACAGTGGTACACA
CCTGGAATCCCAACACTGGGAGGTATGAGACAAGAAGACATTTGGGCCCG
TGGCCCAGGTAATCTAGCCAAATCTGAATGTTCAGTAAGAGACTGTGCCA
C
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATTGGTTACCTCTAGACCAGTG
GTTCTTAACCTTCCTAATGCTGTGACCCTTTCATAGTTTCTCTTGTCGTG
GCGACCCTCCCAACCATAAATTTTTTTTTGTTGCTACTTCATAACTGCAA
TTTGCTGCAGTTATGAATCATAATATAAACACCTGTGTTTTCTAATGAGG
TGACTCCTGTGAAAGGGTCAAACAACCCCCAAATAGGGGTTGAACAAGAT
ACTCTTAAATTCTCCTGAAAAAGCACACTTGTTTCAAAGTTCTGCTCTGC
GTGACATGAAAGCACACTGTAAAAGTTGGGTTTTTGAAAATGCCCTAGTC
TCTGAGTGGGATCCTTATTTAATAACTTCATATGTCTACGGTTTACCAAT
ACTACCTCATTTTAAATCCCAGTGATGTGCTTTTATACTTGTACACATTT
ACTTCTCTTATTTTTCTACTTTGCATCACTGTGTGCGTGTGTGTGTGTGT
GTGTGTTCATGATTCTTCCACCATTCCTTTCGATCAGGCCCCTTTTGTTG
AATACTAGGGCTTGCTAATTCCCTTCGCACCTTTATATACTTTTTCGTGT
TCGCTATTTATCGTAATCATATTCCCCGAGTTGTAAGGCAAACGCCCTAC
CATTTGATCTCTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_n09.b1 MSMg01no055_n09.b1 CHROMAT_FILE:
MSMg01no055_n09.b1 PHD_FILE: MSMg01no055_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:21 2005
         (593 letters)



>mm_chr9_41191115_41192107
          Length = 993

 Score = 1133 bits (586), Expect = 0.0
 Identities = 589/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccctctacctgcttctctgggtacagatttagaaatgaggtggtatggaaat 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccctctagctgcttctctgggtacagatttagaaatgaggtggtatggaaat 263

                                                                       
Query: 64  tagtcaccccatagctgctgaaaagaagtttgtaggaaggtaataagaggcattctcaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagtcaccccatagctgctgaaaagaagtttgtaggaaggtaataagaggcattctcaaa 323

                                                                       
Query: 124 tgaacatccagtccttcacagtgtgagcaacatcgcagggtcttacccctctgcccttgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaacatccagtccttcacagtgtgagcaacatcgcagggtcttacccctctgcccttgg 383

                                                                       
Query: 184 gagcctctcgtcccatctacctaagcctctgagaagaaaagactgaagtggtacccagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagcctctcgtcccatctacctaagcctctgagaagaaaagactgaagtggtacccagca 443

                                                                       
Query: 244 gaaacaccagcatcactggccagtgaagccaggttgcctaagcataaactaagaaattaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaacaccagcatcactggccagtgaagccaggttgcctaagcataaactaagaaattaa 503

                                                                       
Query: 304 agataagtaagtgtattttattcagtctgttgaaggaaatccatcattactgtgcaaagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agataagtaagtgtattttattcagtctgttgaaggaaatccatcattactgtgcaaagt 563

                                                                       
Query: 364 cacttggcagtgataatctaactcatctttccgctttccctccctggtataaatacatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacttggcagtgataatctaactcatctttccgctttccctccctggtataaatacatat 623

                                                                       
Query: 424 acataaagtatatggtatacatacagggaaactggggggttcagtggagttttggcttac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acataaagtatatggtatacatacagggaaactggggggttcagtggagttttggcttac 683

                                                                       
Query: 484 ccacaattaagtaacacgtggtgatgggctggggagatgggaccttatgtgaaattctgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccacaattaagtaacacgtggtgatgggctggggagatgggaccttatgtgaaattctgg 743

                                                             
Query: 544 acacagtggtacacacctggaatcccaacactgggaggtatgagacaaga 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acacagtggtacacacctggaatcccaacactgggaggtatgagacaaga 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)