BAC Information

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BAC

Clone NameMSMg01-056M17
Chromosome9 (Build37)
Map Location 47,353,001 - 47,353,245
singlet/doubletsinglet
Overlap geneCadm1
Upstream geneEG667890, 2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056M17.T7 (MSMg01no056_m17.b1)MSMg01-056M17.TJ (MSMg01no056_m17.g1)
ACCAG284112AG284113
length720701
length of high quality
(start - end)
---245 (70 - 314)
definitionCHROMAT_FILE: MSMg01no056_m17.b1 PHD_FILE: MSMg01no056_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:33 2005CHROMAT_FILE: MSMg01no056_m17.g1 PHD_FILE: MSMg01no056_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAAATTGCGGCGCCANAGANNNCCATTCGAACCCGCNCGGAANCNCNG
CTTGCCGGACCNGAGGGGGGAAANAAAGAAANNNNAAAAAAANNAGAGAT
TTTCACCCCAGAAGAGAGAGNGGANAGAAGGGAGGAANGGGGNNAAGAGG
GAGGGNAGAANGGAGAANAAANAAAAGAAAGGGAGGAGGGNAAAAAGGAA
GAAGAGGGAAGNNNGGGAAAGGNANAGAAAGTTTTTTTTAGNAGGAGGGT
GTGGNAAATGAGGAAGAAAGGGNAAGCCAAGAAGAAAGGNAGGGGTTTTT
TTTTATTTAGAGGAGGAGACAGGGAGGGGGCNCAGNAGNGGNTTTTTTTC
CCCCCCCCTTGCTATAGAAGTATGAGAATCCAATTCTGGGGGCTTCAGTA
TCCACAGAAGAATAAAAAAGCCCAATGTGGAGGAGCAGCGACTATAAACC
CAGATCACGGACAGGGCAGCAGGGATGTAAAGTCGGGCCACAGATCCCTG
AGGTCTGCCAGGCTGGCCAGTCAGACCAATCAATGTGTTTTCAGTTCGGA
AACTGATCTCGCCCGGACAAAGCTGCTGCAAACGAGCACAAAGGGAGGAA
ACCCAAAGAGACCACCTCCCACCCGCCCAAAACCCCCCAATTTTTTTTTT
TTTTTTTTGGTAAAAGACCCGGCCACGACATAGATATTCCCCCCCCGTTA
ATAAGTTGACAACCACAAAA
CGATACAGTGGGAGGCCTGGCGGCCGCCTGTTTCAAAAATGGAGGTGACA
CTATAGATTTATCAACGAAATTCACGAAGGAAAAAGGATAGGACACACAC
CTATTGGAAATTCAATTGTGCAACAGGAAACTGGCGAATAAAAGCACACT
TCGGACTGGTTCACTTTCAAGTTGGTCTTCTACTCTGAACTAGTGTCATT
GTGTCCCCTGTTCATGTGCATTCTTAAAGGATTTAGAAAAGTTGTAACAG
GCACCTAATATCCAATTCATCCTCACTGACTGTGTGTTACGCACAAGCCT
GTGTGTCCAGTGTTGTTATCAATGCAAATAAGAAATCATCCTGCGACTCA
AGACACAGACACGCCCACCCACTACACGTGGACACACGCTGACACATGAG
AAAGTAAAACACCAACCAGCATGGAAAAACCAGAGAGGCTTCAGTAGAGA
GAGGTGGCAAGGACAATACTATAATCTGCCTAGGAAATTAGGTAAGACCT
GAAAAAGAAAACAGCAGACTTGGGCCATTCTGGTTGCCATTTAAATTTGC
TAACCCTGAGGCAGGAAAAGGAAAGAAGCCCGAGAAAAACCAAACACGCA
GCAAGTACGTTACAGGAGGCTGGCTTCCAAGAAGGATGTCCTGATGAATG
GGGGGGGGGGGGGGTGCCACACTTTTTTTTAACCCCCCTCTAGTCCACTG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_m17.g1 MSMg01no056_m17.g1 CHROMAT_FILE:
MSMg01no056_m17.g1 PHD_FILE: MSMg01no056_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:33 2005
         (245 letters)



>mm_chr9_47352801_47353445
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcacgaaggaaaaaggataggacacacacctattggaaattcaattgtgcaacaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 attcacgaaggaaaaaggataggacacacacctattggaaattcaattgtgtaacaggaa 386

                                                                       
Query: 61  actggcgaataaaagcacacttcggactggttcactttcaagttggtcttctactctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actggcgaataaaagcacacttcggactggttcactttcaagttggtcttctactctgaa 326

                                                                       
Query: 121 ctagtgtcattgtgtcccctgttcatgtgcattcttaaaggatttagaaaagttgtaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagtgtcattgtgtcccctgttcatgtgcattcttaaaggatttagaaaagttgtaaca 266

                                                                       
Query: 181 ggcacctaatatccaattcatcctcactgactgtgtgttacgcacaagcctgtgtgtcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcacctaatatccaattcatcctcactgactgtgtgttacgcacaagcctgtgtgtcca 206

                
Query: 241 gtgtt 245
           |||||
Sbjct: 205 gtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)