MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-056N04
Chromosome	9 (Build37)
Map Location	78,893,418 - 79,047,735
singlet/doublet	doublet
Overlap gene	none
Upstream gene	Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream gene	LOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gcm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14531 MGI:108045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666353 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666353
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	Fbxo9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71538 MGI:1918788
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ick (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56542 MGI:1934157
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C920006O11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320295 MGI:2443759
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 22 ESTs

name	Gsta4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14860 MGI:1309515
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041074 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041074
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins pseudo : _no_value

name	Gsta1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14857 MGI:1095417
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666367 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666367
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 28 ESTs, 1 Protein

name	LOC100042295 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042295
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 114 ESTs, 20 Proteins

name	LOC666373 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666373
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 ESTs, 1 Protein

name	LOC100042314 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042314
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 56 ESTs, 19 Proteins

name	Omt2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18379 MGI:106620
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 105 ESTs

name	EG666383 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666383 MGI:3643195
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins

name	Omt2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382088 MGI:106619
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gsta2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14858 MGI:95863
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dppa5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434423 MGI:101800
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410146L05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67968 MGI:1915218
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666408 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666408
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC100042356 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042356
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins

name	LOC666419 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	E330016A19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214763 MGI:2442261
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mto1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68291 MGI:1915541
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eef1a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13627 MGI:1096881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc17a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235504 MGI:1924105
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd109 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235505 MGI:2445221
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC384957 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384957
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins pseudo : _no_value

name	EG666456 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666456 MGI:3648797
definition	note : predicted gene, EG666456 pseudo : _no_value

name	LOC436085 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:436085
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 2 Proteins pseudo : _no_value

name	LOC235509 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:235509
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 Proteins pseudo : _no_value

name	LOC666479 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666479
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Col12a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12816 MGI:88448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cox7a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12866 MGI:1316715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem30a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69981 MGI:106402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Filip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70598 MGI:1917848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041218 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041218
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC666490 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666490
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Senp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215351 MGI:1922075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041249 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041249
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	Myo6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17920 MGI:104785
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gcm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130983 GeneID:14531 MGI:108045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glial cells missing homolog 1 (Drosophila) transcript_id : NM_008103.3

name	Fbxo9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125628674 GeneID:71538 MGI:1918788
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : f-box protein 9 transcript_id : NM_001081490.1

name	Fbxo9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125628672 GeneID:71538 MGI:1918788
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : f-box protein 9 transcript_id : NM_023605.2

name	Ick (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9910287 GeneID:56542 MGI:1934157
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : intestinal cell kinase transcript_id : NM_019987.1

name	C920006O11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260038 GeneID:320295 MGI:2443759
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 22 ESTs product : RIKEN cDNA C920006O11 gene transcript_id : XM_001475726.1

name	Gsta4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349705 GeneID:14860 MGI:1309515
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutathione S-transferase, alpha 4 transcript_id : NM_010357.2

name	Gsta1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61098064 GeneID:14857 MGI:1095417
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutathione S-transferase, alpha 1 (Ya) transcript_id : NM_008181.2

name	LOC666367 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260040 GeneID:666367
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 28 ESTs, 1 Protein product : similar to developmental pluripotency associated 5 transcript_id : XM_983385.2

name	LOC100042295 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260086 GeneID:100042295
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 114 ESTs, 20 Proteins product : similar to Glutathione S-transferase, alpha 1 (Ya) transcript_id : XM_001478795.1

name	LOC666373 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260042 GeneID:666373
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 ESTs, 1 Protein product : similar to developmental pluripotency associated 5 transcript_id : XM_983421.2

name	LOC100042314 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260088 GeneID:100042314
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 56 ESTs, 19 Proteins product : similar to Gsta2 protein transcript_id : XM_001478803.1

name	Omt2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260092 GeneID:18379 MGI:106620
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 103 ESTs product : oocyte maturation, alpha, transcript variant 2 transcript_id : XM_993248.2

name	Omt2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260090 GeneID:18379 MGI:106620
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs product : oocyte maturation, alpha, transcript variant 1 transcript_id : XM_001478815.1

name	EG666383 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260044 GeneID:666383 MGI:3643195
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins product : predicted gene, EG666383 transcript_id : XM_983501.2

name	Omt2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46849793 GeneID:382088 MGI:106619
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oocyte maturation, beta transcript_id : NM_205822.1

name	Gsta2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130920 GeneID:14858 MGI:95863
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutathione S-transferase, alpha 2 (Yc2) transcript_id : NM_008182.3

name	Dppa5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386425 GeneID:434423 MGI:101800
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : developmental pluripotency associated 5 transcript_id : NM_025274.2

name	2410146L05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364511 GeneID:67968 MGI:1915218
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410146L05 gene transcript_id : NM_026480.2

name	LOC100042356 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260093 GeneID:100042356
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins product : similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 transcript_id : XM_001478854.1

name	E330016A19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116812911 GeneID:214763 MGI:2442261
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E330016A19 gene transcript_id : NM_173386.2

name	Mto1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19073794 GeneID:68291 MGI:1915541
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial translation optimization 1 homolog (S. cerevisiae) transcript_id : NM_026658.1

name	Eef1a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126032328 GeneID:13627 MGI:1096881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation elongation factor 1 alpha 1 transcript_id : NM_010106.2

name	Slc17a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801900 GeneID:235504 MGI:1924105
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 17 (anion/sugar transporter), member 5 transcript_id : NM_172773.2

name	Cd109 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328375 GeneID:235505 MGI:2445221
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD109 antigen transcript_id : NM_153098.2

name	Col12a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074528 GeneID:12816 MGI:88448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type XII, alpha 1 transcript_id : NM_007730.2

name	Cox7a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83921587 GeneID:12866 MGI:1316715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome c oxidase, subunit VIIa 2 transcript_id : NM_009945.3

name	Tmem30a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364032 GeneID:69981 MGI:106402
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 30A transcript_id : NM_133718.3

name	Filip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486974 GeneID:70598 MGI:1917848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : filamin A interacting protein 1 transcript_id : NM_001081243.1

name	LOC100041218 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260049 GeneID:100041218
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041218 transcript_id : XM_001475989.1

name	Senp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46560560 GeneID:215351 MGI:1922075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SUMO/sentrin specific peptidase 6 transcript_id : NM_146003.2

name	LOC100041249 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260051 GeneID:100041249
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : hypothetical protein LOC100041249 transcript_id : XM_001476043.1

name	Myo6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88196799 GeneID:17920 MGI:104785
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin VI transcript_id : NM_001039546.1

name	Gcm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45433557 CCDS:CCDS23356.1 GeneID:14531 MGI:108045
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS] [Evidence ISS]; GO:0008134 - transcription factor binding [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : Gcm 1; Gcm a; glial cell deficient product : glial cells missing homolog 1 protein_id : NP_032129.2

name	Fbxo9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125628675 GeneID:71538 MGI:1918788
definition	GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : isoform 2 is encoded by transcript variant 2; f-box only protein 9 product : f-box only protein 9 isoform 2 protein_id : NP_001074959.1

name	Fbxo9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125628673 GeneID:71538 MGI:1918788
definition	GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : isoform 1 is encoded by transcript variant 1; f-box only protein 9 product : f-box only protein 9 isoform 1 protein_id : NP_076094.2

name	Ick (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910288 GeneID:56542 MGI:1934157
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA] [Evidence ISS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA] [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS] [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS] [Evidence IEA]; GO:0007243 - protein kinase cascade [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] [Evidence ISS] codon_start : 1 exception : mismatches in translation product : intestinal cell kinase protein_id : NP_064371.1

name	C920006O11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260039 GeneID:320295 MGI:2443759
definition	codon_start : 1 product : hypothetical protein LOC320295 protein_id : XP_001475776.1

name	Gsta4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754082 CCDS:CCDS23357.1 GeneID:14860 MGI:1309515
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0004364 - glutathione transferase activity [Evidence ISS] [Evidence TAS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glutathione S-transferase, alpha 4 protein_id : NP_034487.1

name	Gsta1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61098065 CCDS:CCDS23358.1 GeneID:14857 MGI:1095417
definition	GO_function : GO:0004364 - glutathione transferase activity [Evidence IEA] [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006749 - glutathione metabolism [Evidence ISS]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glutathione S-transferase, alpha 1 (Ya) protein_id : NP_032207.2

name	LOC666367 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260041 GeneID:666367
definition	codon_start : 1 product : hypothetical protein protein_id : XP_988479.2

name	LOC100042295 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260087 GeneID:100042295
definition	codon_start : 1 product : similar to Glutathione S-transferase, alpha 1 (Ya) protein_id : XP_001478845.1

name	LOC666373 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260043 GeneID:666373
definition	codon_start : 1 product : hypothetical protein protein_id : XP_988515.2

name	LOC100042314 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260089 GeneID:100042314
definition	codon_start : 1 product : similar to Gsta2 protein protein_id : XP_001478853.1

name	Omt2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260091 GeneID:18379 MGI:106620
definition	codon_start : 1 product : oocyte maturation, alpha isoform 1 protein_id : XP_001478865.1

name	Omt2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386245 GeneID:18379 MGI:106620
definition	codon_start : 1 product : oocyte maturation, alpha isoform 2 protein_id : XP_998342.1

name	EG666383 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260045 GeneID:666383 MGI:3643195
definition	codon_start : 1 product : similar to Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh protein_id : XP_988595.2

name	Omt2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46849794 GeneID:382088 MGI:106619
definition	GO_component : GO:0005829 - cytosol [Evidence TAS] codon_start : 1 product : oocyte maturation, beta protein_id : NP_991391.1

name	Gsta2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50263046 CCDS:CCDS23359.1 GeneID:14858 MGI:95863
definition	GO_function : GO:0004364 - glutathione transferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : glutathione S-transferase, alpha 2 (Yc2) protein_id : NP_032208.2

name	Dppa5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27228963 CCDS:CCDS23360.1 GeneID:434423 MGI:101800
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : embryonal stem cell specific gene 1 product : developmental pluripotency associated 5 protein_id : NP_079550.2

name	2410146L05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312688 CCDS:CCDS23361.1 GeneID:67968 MGI:1915218
definition	codon_start : 1 note : oocyte and embryo specific protein product : hypothetical protein LOC67968 protein_id : NP_080756.1

name	LOC100042356 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260094 GeneID:100042356
definition	codon_start : 1 product : similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 protein_id : XP_001478904.1

name	E330016A19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116812912 GeneID:214763 MGI:2442261
definition	codon_start : 1 product : hypothetical protein LOC214763 protein_id : NP_775562.2

name	Mto1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19073795 CCDS:CCDS23363.1 GeneID:68291 MGI:1915541
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA] GO_function : GO:0050660 - FAD binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0045333 - cellular respiration [Evidence TAS]; GO:0006118 - electron transport [Evidence IEA]; GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation product : MTO1 protein_id : NP_080934.1

name	Eef1a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126032329 GeneID:13627 MGI:1096881
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003746 - translation elongation factor activity [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA] codon_start : 1 note : elongation factor Tu; elongation factor 1 A-1 product : eukaryotic translation elongation factor 1 alpha 1 protein_id : NP_034236.2

name	Slc17a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370146 CCDS:CCDS23364.1 GeneID:235504 MGI:1924105
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005765 - lysosomal membrane [Evidence ISS]; GO:0005764 - lysosome [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0015136 - sialic acid transporter activity [Evidence ISS]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0015739 - sialic acid transport [Evidence ISS] codon_start : 1 product : solute carrier family 17 (anion/sugar transporter), member 5 protein_id : NP_766361.1

name	Cd109 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346525 CCDS:CCDS23365.1 GeneID:235505 MGI:2445221
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : GPI-anchored alpha 2 macroglobulin-related protein; Gov platelet alloantigens product : CD109 antigen protein_id : NP_694738.1

name	Col12a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111074529 GeneID:12816 MGI:88448
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : procollagen, type XII, alpha 1 protein_id : NP_031756.2

name	Cox7a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981830 CCDS:CCDS23366.1 GeneID:12866 MGI:1316715
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005746 - mitochondrial electron transport chain [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0009055 - electron carrier activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 note : cytochrome c oxidase subunit VIIa-L; cytochrome c oxidase subunit VIIa 3 product : cytochrome c oxidase, subunit VIIa 2 protein_id : NP_034075.2

name	Tmem30a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526900 CCDS:CCDS23367.1 GeneID:69981 MGI:106402
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : transmembrane protein 30A protein_id : NP_598479.1

name	Filip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486975 GeneID:70598 MGI:1917848
definition	codon_start : 1 product : filamin A interacting protein 1 protein_id : NP_001074712.1

name	LOC100041218 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260050 GeneID:100041218
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476039.1

name	Senp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46560561 GeneID:215351 MGI:1922075
definition	GO_function : GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : SUMO-1-specific protease product : SUMO/sentrin specific protease 6 protein_id : NP_666115.2

name	LOC100041249 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260052 GeneID:100041249
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476093.1

name	LOC666353 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666353
definition	number : 1 pseudo : _no_value

name	LOC666353 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666353
definition	number : 2 pseudo : _no_value

name	LOC666353 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666353
definition	number : 3 pseudo : _no_value

name	LOC666353 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666353
definition	number : 4 pseudo : _no_value

name	LOC100041074 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041074
definition	number : 3 pseudo : _no_value

name	LOC100041074 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041074
definition	number : 2 pseudo : _no_value

name	LOC100041074 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041074
definition	number : 1 pseudo : _no_value

name	LOC666408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666408
definition	number : 6 pseudo : _no_value

name	LOC666408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666408
definition	number : 5 pseudo : _no_value

name	LOC666408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666408
definition	number : 4 pseudo : _no_value

name	LOC666408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666408
definition	number : 3 pseudo : _no_value

name	LOC666408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666408
definition	number : 2 pseudo : _no_value

name	LOC666408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666408
definition	number : 1 pseudo : _no_value

name	LOC666419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666419
definition	number : 1 pseudo : _no_value

name	LOC666419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666419
definition	number : 2 pseudo : _no_value

name	LOC666419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666419
definition	number : 3 pseudo : _no_value

name	LOC666419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666419
definition	number : 4 pseudo : _no_value

name	LOC384957 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384957
definition	number : 1 pseudo : _no_value

name	LOC235509 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:235509
definition	number : 1 pseudo : _no_value

name	LOC235509 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:235509
definition	number : 2 pseudo : _no_value

name	LOC235509 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:235509
definition	number : 3 pseudo : _no_value

name	LOC666479 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666479
definition	number : 1 pseudo : _no_value

name	LOC666479 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666479
definition	number : 2 pseudo : _no_value

name	LOC666479 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666479
definition	number : 3 pseudo : _no_value

name	LOC666490 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666490
definition	number : 1 pseudo : _no_value

name	LOC666490 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666490
definition	number : 2 pseudo : _no_value

name	LOC666490 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666490
definition	number : 3 pseudo : _no_value

name	LOC666490 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666490
definition	number : 4 pseudo : _no_value

name	LOC436085 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260048 GeneID:436085
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 2 Proteins product : hypothetical LOC436085 pseudo : _no_value transcript_id : XR_032484.1

clone name	MSMg01-296A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501G15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-324D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126B12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-418D05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-373D01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-195K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324O10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-405G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326M07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-056N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179M22
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-056N04.T7 (MSMg01no056_n04.b1)	MSMg01-056N04.TJ (MSMg01no056_n04.g1)
ACC	AG284134	AG284135
length	755	777
length of high quality (start - end)	249 (66 - 314)	141 (72 - 212)
definition	CHROMAT_FILE: MSMg01no056_n04.b1 PHD_FILE: MSMg01no056_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:35 2005	CHROMAT_FILE: MSMg01no056_n04.g1 PHD_FILE: MSMg01no056_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:35 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(78,893,418 - 78,893,666)	(79,047,595 - 79,047,735)
sequence	CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA TTCCACTACTTTTCTTGAATTAATAGAAAAAAACACACCCAAACTATCCT AAATGGAATCCCAAGTAAAATTCTCAGCCAAATAATTTACATTTAGAAAA ATAAGATGTATACAAATAAAACTACCCATAATTTAGCTTACCTCTCTAAG TCACAAGTACCTATTTTGAGGCTTTTGATAGTCTCCAGATAGCATTAGAA CAGGTATGTATTAAGCATTTGACTTGTCTTATAGCATGACTTGACCTATT TTATAAATGAGTCATCTACTTGTTAGTCAAAGATTCCTAGCTAAGCTCTT TAATGCTTTGTCCCTAACCATGGGATCAACAGTGTAGATCTGGGTTATGC CACCTGAAGCTAGGTCTGCTAGCCACATGCTTCCTTCTCTAAGCATATGG GGTCTTCTATGTGTGCTGTTGTACTTTTTTTCATCTATACATTGTTGTCC TTTTTTTAAAATCTGTATCTGTGATATATTGACCTTCCAGTATCACTTGT ATTGTCGTGTTGAATAGCTTTGATTTATATATTTCATTATATAAGGTAAT AAATCCCTCCATATATAACGTTAAATTGGATTAAGGATTGAAAATCAGTT TGTTTGTTTTCGGCCTTTGGAATTTTATATTATCTCATCGCCCCACCTGT TCTGTATTATTTTAGACTAGTTTCTGCATCATTCTATATTTCTTAATTAA TAAAA	TTACAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXCATATGCTAAATAATAGAAGGAATAAATG ATGCTTACTTAAATACAGACAAGCCACGCATTAGTATTTTAATGTACAAT TAGGATATCTTTTCATTTATTATTTGATTATTTCACACATGAACATAATA TATCTTCTTTGTATCCACTATTGTAAACAGTGAATTGACGCTGACATATA TAGTTTCCAATTCTAACATTAACACTTTATATAGTAAATCATACGGTTAT CTTTATTCCGGACCACATTTGATCTCATTACATATATTTAAGTGTGTTCT ATATGTTGCGTTGTATAATTTCTTCCCTTCCTGTAATTGTGCATGATGTC TTCATTCGTATGCTCTTTCGCCTGTAACTCCTCTTCTCCTCCTTTCTTCC TATATTTTTTTGATTTTTTGTATTCTTCTTTTTTTAATATCCTCCTCAAT ACTATTATATTTTACTATTATAATCTTAAAATATTACGAACAATAAAATT TACCCTTTTTCAGTCGACTGCACTAACTTTATTATTATATACCACTCATA TTATTACAATATTTTCTCTATTCGTCGTTTGTAATAATAGTAACATATTT AAACTATTCTCTACTCATCTCTATACTATTTTTACTTATCCATACGACCC TAACTCCTCCCTCTTTATATCCCTATCTAAATTATTCCCTCCACTCTATA ACTACTTTACACTATGCCTAACCCTTC
quality values	Open. Hide. 9 9 9 9 10 16 18 28 25 20 17 18 17 17 19 22 17 13 13 19 34 39 41 23 19 10 10 10 23 21 24 9 9 9 12 11 12 18 15 12 10 10 10 19 25 37 39 33 33 33 30 22 16 20 14 24 23 21 21 10 10 8 8 8 8 15 19 30 30 33 33 33 24 33 33 33 36 36 57 57 57 50 43 43 34 34 34 34 42 37 42 42 48 57 54 54 68 68 57 57 57 54 54 54 54 50 50 50 47 47 47 47 47 48 48 57 68 50 50 42 42 37 41 37 37 42 42 47 47 48 57 57 57 57 57 57 57 57 57 54 54 57 57 57 57 57 57 57 57 57 57 57 57 50 46 46 46 46 46 47 50 50 43 43 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 57 52 52 57 52 57 57 57 57 57 57 52 52 52 57 57 57 52 45 45 45 43 57 57 57 52 57 57 57 57 57 57 57 59 59 57 57 57 57 57 57 57 50 50 41 37 37 35 35 33 43 43 37 37 37 37 43 42 35 35 37 38 38 32 33 28 43 32 37 43 37 37 44 50 57 50 47 46 46 37 43 43 47 57 57 57 57 57 57 57 47 47 39 39 42 47 42 42 42 39 37 37 43 43 43 47 47 47 47 47 47 47 47 47 48 47 43 43 39 32 28 20 19 25 32 28 26 17 12 12 10 13 14 17 17 21 23 23 12 12 12 21 21 30 30 17 17 17 30 30 28 28 28 30 19 17 10 10 10 15 22 22 13 13 13 22 22 37 36 26 29 20 20 20 32 32 30 30 15 13 8 8 8 8 8 15 24 21 15 13 13 12 13 11 11 11 11 12 11 12 11 16 11 13 13 19 19 21 11 15 13 23 15 16 15 10 8 8 8 8 12 9 10 8 8 10 10 10 10 8 11 11 15 18 13 13 13 18 15 14 14 15 16 13 13 13 9 12 11 16 14 17 12 15 8 8 8 13 13 10 10 10 8 8 8 8 6 8 6 6 15 10 8 8 10 10 10 8 8 8 8 8 8 8 8 8 8 10 9 10 9 9 10 10 9 9 9 10 9 10 10 10 9 9 14 13 10 8 8 7 7 8 6 6 6 8 10 13 10 8 8 8 10 10 10 8 8 8 8 8 8 11 10 10 10 8 8 8 10 9 9 9 8 8 8 8 6 6 8 8 8 8 8 8 8 8 10 10 11 11 10 10 16 13 14 10 10 11 19 18 16 10 9 9 9 9 9 10 11 10 10 10 10 10 10 11 15 10 10 10 10 10 9 12 8 8 8 8 9 13 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 8 8 8 8 9 8 8 8 8 8 8 10 10 8 9 9 8 8 8 6 6 8 8 8 10 13 15 12 12 10 10 10 9 9 8 8 8 8 8 8 10 10 8 10 10 16 12 11 15 9 12 8 8 8 8 10 10 11 8 8 8 8 8 8 10 10 10 10 7 8 6 6 8 8 8 8 8 6 8 6 6 6 6 9 9 8 8 6 6 8 8 8 8 8 11 10 10 11 9 9 9 18 18 11 11 11 10 6 6 6 6 10 12 11 12 12 10 10 11 11 11 12 13 10 8 8 8 8 8 8 8 8 8 10 10 9 8 8 8 8 10 8 8 8 8 8 8 8 10 8 9 9 9 10 10 10	Open. Hide. 9 9 9 9 9 9 10 9 10 10 10 10 14 14 15 19 30 30 34 30 32 30 33 37 40 27 27 12 12 9 9 11 12 9 9 11 11 11 11 11 12 11 18 19 23 19 10 14 14 29 21 28 30 22 18 19 13 11 17 13 13 13 12 12 9 9 13 19 21 28 28 28 28 29 29 39 39 39 39 43 43 43 34 34 24 29 14 14 13 18 12 15 21 29 31 33 29 30 30 29 29 28 28 19 23 12 11 11 23 26 43 43 30 30 24 20 19 24 24 32 32 19 19 16 16 14 19 28 37 41 36 30 28 28 19 24 28 40 43 43 37 32 30 22 22 32 33 39 37 30 24 16 14 19 26 26 36 41 41 47 47 37 36 34 31 36 36 41 48 48 48 48 48 48 41 36 42 42 42 36 42 32 32 20 20 20 28 24 28 28 39 30 30 30 35 21 26 19 20 21 23 33 33 31 30 30 30 30 19 19 14 14 14 19 21 17 17 17 24 22 25 19 19 12 12 12 12 12 18 18 15 8 8 8 8 8 8 12 10 10 11 13 16 11 11 11 11 11 8 8 8 8 8 12 10 14 9 9 9 12 16 18 16 14 11 13 9 9 9 10 11 11 10 10 10 10 15 15 15 9 9 9 8 8 8 8 10 10 19 18 22 17 22 13 12 10 10 8 8 10 8 12 14 17 22 22 17 10 10 9 9 8 8 6 7 7 8 8 10 15 10 10 11 12 9 8 8 8 8 6 6 8 8 8 10 10 10 8 8 8 8 8 8 8 14 16 10 12 12 12 10 8 8 8 8 10 11 11 10 8 8 7 6 8 8 8 8 9 9 9 9 9 9 9 9 11 11 12 12 15 15 16 10 10 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 11 13 10 8 7 6 8 8 8 8 8 8 8 11 8 10 10 10 10 9 10 10 10 10 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 11 8 10 8 8 8 8 8 8 10 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 10 8 8 8 6 8 8 10 10 8 9 9 9 8 8 6 6 8 8 7 7 8 9 9 8 10 14 14 8 8 7 7 10 9 7 8 8 8 8 8 8 8 8 8 8 8 8 11 10 11 12 10 10 10 6 6 6 6 8 8 9 9 9 10 9 8 8 8 10 8 10 16 18 13 12 12 12 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 13 13 13 13 11 11 6 6 8 10 9 10 10 12 8 8 6 7 10 10 10 10 13 11 6 8 6 6 8 8 12 12 11 8 8 8 8 9 9 10 10 8 8 8 8 8 8 8 8 13 8 8 6 7 8 8 8 8 8 8 6 6 8 8 8 8 8 6 6 8 10 12 12 10 10 10 10 10 14 16 16 12 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 9 8 8 10 10 8 6 10 12 10 10 11 11 9 9 8 8 8 8 8 8 10 9 9 9 9 9 10 10 13 13 13 8 6 6 6 6 8 8 12 11 9 8 8 6 6 8 10 9 10 11 12 10 10 9 9 9 8 8 8 10 8 8 10 10 10 8 10 6 6 8 8 11 12 11 11 11 11 11 11 11 11 11 12 12 12 12 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no056_n04.b1 MSMg01no056_n04.b1 CHROMAT_FILE:
MSMg01no056_n04.b1 PHD_FILE: MSMg01no056_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:35 2005
         (249 letters)



>mm_chr9_78893218_78893866
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaattaatagaaaaaaacacacccaaactatcctaaatggaatcccaagtaaaattctc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaattaatagaaaacaacacacccaaactatcctaaatggaatcccaagtaaaattctc 260

                                                                       
Query: 61  agccaaataatttacatttagaaaaataagatgtatacaaataaaactacccataattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccaaataatttacatttagaaaaataagatgtatacaaataaaactacccataattta 320

                                                                       
Query: 121 gcttacctctctaagtcacaagtacctattttgaggcttttgatagtctccagatagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttacctctctaagtcacaagtacctattttgaggcttttgatagtctccagatagcat 380

                                                                       
Query: 181 tagaacaggtatgtattaagcatttgacttgtcttatagcatgacttgacctattttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaacaggtatgtattaagcatttgacttgtcttatagcatgacttgacctattttata 440

                    
Query: 241 aatgagtca 249
           |||||||||
Sbjct: 441 aatgagtca 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no056_n04.g1 MSMg01no056_n04.g1 CHROMAT_FILE:
MSMg01no056_n04.g1 PHD_FILE: MSMg01no056_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:35 2005
         (141 letters)



>mm_chr9_79047395_79047935
          Length = 541

 Score =  273 bits (141), Expect = 4e-78
 Identities = 141/141 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatgctaaataatagaaggaataaatgatgcttacttaaatacagacaagccacgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 catatgctaaataatagaaggaataaatgatgcttacttaaatacagacaagccacgcat 282

                                                                       
Query: 61  tagtattttaatgtacaattaggatatcttttcatttattatttgattatttcacacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tagtattttaatgtacaattaggatatcttttcatttattatttgattatttcacacatg 222

                                
Query: 121 aacataatatatcttctttgt 141
           |||||||||||||||||||||
Sbjct: 221 aacataatatatcttctttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information