Query= MSMg01no057_f04.b1 MSMg01no057_f04.b1 CHROMAT_FILE:
MSMg01no057_f04.b1 PHD_FILE: MSMg01no057_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:14 2005
(581 letters)
>mm_chr9_9660050_9661029
Length = 980
Score = 1093 bits (565), Expect = 0.0
Identities = 577/581 (99%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 1 tggctagaccaactgaactgctgtggccatgcggtgtttccacaactcagttttaagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggctagaccaactgaactgctgtggccatgcggtgtttccacaactcagttttaagaac 260
Query: 61 atcattgaacctaagaaactctctttattatgatagctggaagcattggtaagtggcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcattgaacctaagaaactctctttattatgatagctggaagcattggtaagtggcata 320
Query: 121 tcataataacactgtcaaaaaactaggaattttttgtttgaataatttgcttcattactt 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tcataataacactgtcaaaaaactcggaattttttgtttgaataatttgcttcattactt 380
Query: 181 ctttcatgagcttgccttatccttacaatcatttgcatgtagaagaaagtcttgcactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcatgagcttgccttatccttacaatcatttgcatgtagaagaaagtcttgcactca 440
Query: 241 attctatgtctgtcttgacagcaggtagagaaatggggtatcctgtcccatgctgattac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctatgtctgtcttgacagcaggtagagaaatggggtatcctgtcccatgctgattac 500
Query: 301 acttttatattagcacctgtggctttgtgctgctgctgttttcagtggtcattatttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttttatattagcacctgtggctttgtgctgctgctgttttcagtggtcattatttttg 560
Query: 361 tgacgttaaactatcttttgacattaaacgtggactgtgtttgctgttaggccacatgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacgttaaactatcttttgacattaaacgtggactgtgtttgctgttaggccacatgtt 620
Query: 421 actccatgggacacaataactcagtttgtattcactctctatttagcttcctctaatgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actccatgggacacaataactcagtttgtattcactctctatttagcttcctctaatgta 680
Query: 481 aattccctaagttgataccttactatagagcacatgtagaatggcctattgaaaaacctt 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattccctaagttaataccttactatagagcacatgtagaatggcctattgaaaaacctt 740
Query: 541 tcttttttttaattcagtcataccacagcttttgagaactc 581
||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 741 tctttttttta-ttcagtcatacaacagcttttgagaactc 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 980
Length adjustment: 10
Effective length of query: 571
Effective length of database: 970
Effective search space: 553870
Effective search space used: 553870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_f04.g1 MSMg01no057_f04.g1 CHROMAT_FILE:
MSMg01no057_f04.g1 PHD_FILE: MSMg01no057_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:14 2005
(406 letters)
>mm_chr9_9747297_9748102
Length = 806
Score = 762 bits (394), Expect = 0.0
Identities = 403/406 (99%)
Strand = Plus / Minus
Query: 1 atcagtttgatatacagtcattttcaggatgcagctctagagaattttttgcattctatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atcagtttgatatacagtcattttcaggatgcagctctagagaattttttgcattctatt 547
Query: 61 atataaacacaaatacatagtgaaggattaggatatagactgtccacatctcaaaaactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 546 atataaacacaaatacatagtgaaggattaggatatagactgtccacatctcagaaattt 487
Query: 121 ctgctgtgtctttataactccatttcagttttatttgtaaaatgaaaatctagcatgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctgctgtgtctttataactccatttcagttttatttgtaaaatgaaaatctagcatgact 427
Query: 181 gtttcctaaaacactggatcatcttaatgtgtgtttttaaacatattttctgttttactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtttcctaaaacactggatcatcttaatgtgtgtttttaaacatattttctgttttactt 367
Query: 241 ttattattttaattcttttcatcactggtaatttcctttaaatattataaaagtaacttt 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 366 ttattattttaattcttttcatcactggtaatttcctttaaatgttataaaagtaacttt 307
Query: 301 ccccaaactttgtaatgttactggaattgtggaaatgatatggaaagtcacactccccga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccccaaactttgtaatgttactggaattgtggaaatgatatggaaagtcacactccccga 247
Query: 361 tagctattagatatagcattactttcaaataaactccaagaccaga 406
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctattagatatagcattactttcaaataaactccaagaccaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
