BAC Information

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BAC

Clone NameMSMg01-057I08
Chromosome9 (Build37)
Map Location 50,916,865 - 50,917,223
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik
Downstream geneBtg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057I08.T7 (MSMg01no057_i08.b1)MSMg01-057I08.TJ (MSMg01no057_i08.g1)
ACCAG284656AG284657
length675764
length of high quality
(start - end)
365 (19 - 383)271 (130 - 400)
definitionCHROMAT_FILE: MSMg01no057_i08.b1 PHD_FILE: MSMg01no057_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:29 2005CHROMAT_FILE: MSMg01no057_i08.g1 PHD_FILE: MSMg01no057_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATATCCAGAGGATCCGCGGAATTCATGAAATTGCCCTTATAGAGAGAG
ATAAAATACACTCATTGTTTTATGAAATAATGCTTCGTATTTTGTTACCA
GAGACAAGCTTTCACTGACAGTACATTTTTTCTAAAACATCTATATGCCC
CATACTCTTATTAGGTGGGACTTGCATTTGCAAATGAATACATGAGTCTA
GAAATATAACTTGAAATCTAAGGAATGGATGTTAAAGAAATTAAATAGGA
GCCAGATATGGTGGCACGTGCCTTTCGTTTCAGTACTCAGGAGGTAGAGA
CAGACAGACCTCTGTGAGTTCCAGGCCAGCCTGGTCTACATAGTAAGTTG
TAAGCCACTCAGGGCTATACAGAGAGAGACTCTGTCTCACCAAACTTAAG
TAGGGCTGATTATAATCCTGTTCATCATTTCATAAATCCATCAAATTTAA
TGTTCATATTAATTTAATGTTACATATTTTTGAAATTACTTTTCTGATGT
AAAATACTTGAATACACATATTTTACTGGATGCACAATCAACCCAGGTGC
CCATCATTGGATAAACAGAAAATCAAAATACAGTATATATACAGCTATAG
TACTTACCCATAAAGATTGGAATCCTGGCATTTGAAGGTAATTGACGGCG
AATATCATATTATGTGGATAAAGCA
GGTTTTGTGGTNTTTTTTTTTGNNTTTTTTTTCTCCCTTNCCCCCTCATC
CTCTTCTCGATGCTGTGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTGTGAATTTTGGCGAGG
AACATGGCTGCTCATTGTCCTTGTCTGAAGAGTCTGCCTGAGGCTAAAGT
GAAGCTTATTAGATTAATTGCACTGGAAAAGGAAATCTCAAAACAGTATA
GTATAGACTCTGTGTGGTTCACTCTTATGAAGAGTGCTTTGATGGAAAGG
AGCAAGCTAAGCGAGAAAAAATACAAAATGTATGGGTCAAGGAGAAAGGG
GGCACCAGGAAGTGGAATGGAGCTAAATCCTCTGTTGATAGAAATAAACA
GATTCAAGATGTTAAATGGAACTGAGGGAGTGCTGACCTCAGGGCAGGAT
CCCACATAGCTAAGCTTCCATCCCGCGAAAAGAAATTAAAGAACAGTTTA
GGTCCAGGTGTGATGATGGCTCATGCCTTTAATCCTGGAACTCACGAGAC
AGAGATGTGCACTTCTCTGATTTCTACAGCACAAGTTCCATGACTGCCCA
GTTTAGGCAGTAAAGGAAATCTTTACTGGCAAAAAAAAACTGGCAAAGAT
GTAATTGAATAAGGGTTCCAACCCCATCTAGTTAGCACAACTTGCCCCCT
GTTAGTTCGGCTTTCCCAGTTTCCAATATTCCAACAGAGGTTTTGGGAAT
TCCCCTTTTGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_i08.b1 MSMg01no057_i08.b1 CHROMAT_FILE:
MSMg01no057_i08.b1 PHD_FILE: MSMg01no057_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:29 2005
         (365 letters)



>mm_chr9_50916663_50917429
          Length = 767

 Score =  617 bits (319), Expect = 0.0
 Identities = 350/361 (96%), Gaps = 4/361 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattc-atgaaattgcccttatagagagag-ataaaatacactcattgttttatgaaat 60
           |||||| |||||||||   |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 203 gaattcaatgaaattgggtttatagagagagtataaaatacactcattgttttatgaaat 262

                                                                       
Query: 61  aatgcttcgtattttgttaccagagacaagctttcactgacagtacattttttctaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatgcttcgtattttgttaccagagacaagctttcactgacagtacattttttctaaaac 322

                                                                       
Query: 121 atctatatgccccatactcttattaggtgggacttgcatttgcaaatgaatacatgagtc 180
           ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 323 atctatatgccccttactcttattaggtgggacatgcattttcaaatgaatacatgagtc 382

                                                                       
Query: 181 tagaaatataacttgaaatctaaggaatggatgttaaagaaattaaataggagccagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagaaatataacttgaaatctaaggaatggatgttaaagaaattaaataggagccagata 442

                                                                       
Query: 241 tggtggcacgtgcctttcgtttcagtactcaggaggtagagacagacagacctctgtgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggtggcacgtgcctttcgtttcagtactcaggaggtagagacagacagacctctgtgag 502

                                                                       
Query: 301 ttccaggccagcctggtctacatagtaagttgtaagccactcagggctatacagagagag 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||
Sbjct: 503 ttccaggccagcctggtctacatagtaagttgtaagctactcagggctatac--agagag 560

            
Query: 361 a 361
           |
Sbjct: 561 a 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 767
Length adjustment: 9
Effective length of query: 356
Effective length of database: 758
Effective search space:   269848
Effective search space used:   269848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)