Query= MSMg01no057_j17.b1 MSMg01no057_j17.b1 CHROMAT_FILE:
MSMg01no057_j17.b1 PHD_FILE: MSMg01no057_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:36 2005
(282 letters)
>mm_chr9_6646854_6647535
Length = 682
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Minus
Query: 1 agaatgaatgtcttgataaagtagtgtattatacaatataagtgggttatctctcatcca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agaatgaatgtcttgataaagcagtgtattatacaatataagtgggttatctctcatcca 298
Query: 61 aaagaagaaaactttcttactctggtgcctccttaacaatgacagtgactgaatgctata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaagaagaaaactttcttactctggtgcctccttaacaatgacagtgactgaatgctata 238
Query: 121 tgtacccgaaaattatacaagggaagctaggagtgaaggatacagacctgttgatagtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgtacccgaaaattatacaagggaagctaggagtgaaggatacagacctgttgatagtgt 178
Query: 181 gcttctttagaatactcaacaccctggcttccattctcagtcctgaattagcccatgcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gcttctttagaatactcaacaccctggcttccattctcagtcctgaattagcccatgcca 118
Query: 241 tgggctacctgtaatatcagcaccttggagatagatgcaaga 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tgggctacctgtaatatcagcaccttggagatagatgcaaga 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no057_j17.g1 MSMg01no057_j17.g1 CHROMAT_FILE:
MSMg01no057_j17.g1 PHD_FILE: MSMg01no057_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:36 2005
(598 letters)
>mm_chr9_6551187_6552183
Length = 997
Score = 1040 bits (538), Expect = 0.0
Identities = 583/598 (97%), Gaps = 1/598 (0%)
Strand = Plus / Plus
Query: 1 tgtagcactggagtttctgcagatagctcctgccaggatggtgtgccgacctgtgagaat 60
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 201 tgtagcactggagtttctgcagatcgctcctgccaggatggtgtgtcgacctgtgagaat 260
Query: 61 aaaaccaaaacttcaatgaagaccccatgaagctagagatgccagcagttcagaattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaccaaaacttcaatgaagaccccatgaagctagagatgccagcagttcagaattctt 320
Query: 121 cacgaagtaagctgcatacagcatgtatactgcccagcagcaggcgtagaagcaggagcc 180
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 321 cacgaagtaagctgcatacagcatgtatactgctcagcagcaggcatagaagcaggagcc 380
Query: 181 aggactgctacagaggtgaagctaccttggaagaatacagcctgtgtgtccagaatgtct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggactgctacagaggtgaagctaccttggaagaatacagcctgtgtgtccagaatgtcc 440
Query: 241 catgctgctcatggaactctttggggttagtgtaaatttggttgtataagagcttgctgc 300
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgctgctcatgg-acactttggggttagtgtaaatttggttgtataagagcttgctgc 499
Query: 301 tgagttggctttaagtcttaggccattatttttgtcacagcaaaatcacaaagtacatgc 360
|||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct: 500 tgagttggctttaaatcttaggccattatttttatcacagcaaaatcacaaaatacacgc 559
Query: 361 agacataagcatgtgcacacatgtaaacaaatgcacacacacaatataaacttcctggaa 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 agacataagcatgtgcacacatgtaaacaaatgcacacacaaaatataaacttcctggaa 619
Query: 421 acatatgcccatgaaagcaacatggtttttattctgtttcttgtaacactaaagattgaa 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 acatatgcccatgaaagcaacatgttttttattctgtttcttgtaacactaaagattgaa 679
Query: 481 ttcaggtcctggttcatgatggacaaatgctgtagcactgaattctattacatctcttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcaggtcctggttcatgatggacaaatgctgtagcactgaattctattacatctcttgt 739
Query: 541 ttccagaaaccagcatttaagtatggagcacattcatggtactgcctccctttgtggg 598
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 740 ttccagaaaccagcatttaagtgtggcgcacattcatggtactgcctccctttgtggg 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 997
Length adjustment: 10
Effective length of query: 588
Effective length of database: 987
Effective search space: 580356
Effective search space used: 580356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
