Query= MSMg01no057_o17.b1 MSMg01no057_o17.b1 CHROMAT_FILE:
MSMg01no057_o17.b1 PHD_FILE: MSMg01no057_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:02 2005
(611 letters)
>mm_chr9_34272302_34273312
Length = 1011
Score = 1098 bits (568), Expect = 0.0
Identities = 599/612 (97%), Gaps = 5/612 (0%)
Strand = Plus / Plus
Query: 5 gaattcataacaatctcaagggctttttggttttttggtttttt-----tgttttgtttt 59
||||||||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct: 200 gaattcataacaaccttaagggctttttggttttttggttttttggttttgttttgtttt 259
Query: 60 taagaattcaagttgtataaaatcatcatacaaaatgttacacaaacactagctgtatta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taagaattcaagttgtataaaatcatcatacaaaatgttacacaaacactagctgtatta 319
Query: 120 gtggtggttacctagagacaagttctttctattaccctgctcagatggctataacaaaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtggtggttacctagagacaagttctttctattaccctgctcagatggctataacaaaat 379
Query: 180 accccaaactagatggtattagacaacagaaatcagcacagccattggaagccatgtata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accccaaactagatggtattagacaacagaaatcagcacagccattggaagccatgtata 439
Query: 240 agggtagcagcatgagtagtttctggaagagggttctcttcctgccttctccttatgtgt 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 agggtagcagcatgagtagtttctggaagagggttctcttgctgccttctccttatgtgt 499
Query: 300 tcacatactctcttactgtcctcgaggagagaatgagagaattagggagggagagctctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcacatactctcttactgtcctcgaggagagaatgagagaattagggagggagagctctc 559
Query: 360 tggagtccttttgcccctaagccccactctggtgacctcatataacctttattacatttt 419
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggagtccttttgtctctaagccccactctggtgacctcatataacctttattacatttt 619
Query: 420 acaacctttatctcaaatacaggcacattaggcagtaggaccccaacacagccatttaag 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 acaacctttatctcaaatacaggcacattaggcagtaggaccccaacactgccatttaag 679
Query: 480 aggacatgatgtagtccacagcagctgcgttagtctgatgcctgtcatttatttccaaac 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 680 aggacatgatgtagtccacagcagctgcgttagactgatgcctgtcatttatttccaaac 739
Query: 540 agacttaagctccttagttttccactaattttgttactactgactcactccattcaaaaa 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 740 agacttaagctccttagttttccacaaattttgttactactgactcactccattcaaaaa 799
Query: 600 tattattgttat 611
||||||||||||
Sbjct: 800 tattattgttat 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_o17.g1 MSMg01no057_o17.g1 CHROMAT_FILE:
MSMg01no057_o17.g1 PHD_FILE: MSMg01no057_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:02 2005
(608 letters)
>mm_chr9_34391891_34392899
Length = 1009
Score = 1122 bits (580), Expect = 0.0
Identities = 602/612 (98%), Gaps = 7/612 (1%)
Strand = Plus / Minus
Query: 1 ctaactattaaaacgtctcttaatttcatttgagagatggaagtaagaagcatgagaaaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 908 ctaactattaaaacgtctcttaatttcatttgagagatggaagcaagaagcatgagaaaa 849
Query: 61 agaagaggagaaagaagaaaaaaggggaaaggggaagaaagatactttattaataacagc 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 848 agaagaggagaaagaagaaaaaaggggaaaggagaagaaagatactttattaataacagc 789
Query: 121 ccaataggaatactatttattttctaataaatagctcccttcttttccttcctcaaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ccaataggaatactatttattttctaataaatagctcccttcttttccttcctcaaaggg 729
Query: 181 ttaaacaaaaaggtaactaaacaatgatttctttataaatgctggacttctgaggcctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttaaacaaaaaggtaactaaacaatgatttctttataaatgctggacttctgaggcctgt 669
Query: 241 tttctctgtt--ataaaatagatttaagataatggccctattctcctcagaataaattaa 298
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttctctgttaaaaaaaatagatttaagataatggccctattctcctcagaataaattaa 609
Query: 299 gctcagagataaagaattccattactaatgcctttcagcaaagccca--ccccatccttt 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 608 gctcagagataaagaattccattactaatgcctttcagcaaagcccagg---catccttt 552
Query: 357 aaagtcaaactttaaagtataatgtgccgtgatcttgttgaaatctttcctgtaatgata 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaagtcaaactttaaagtataatgtgccgtgatcttgttgaaatctttcctgtaatgata 492
Query: 417 tttaactgatgggcaaggtatcaatggttgaggcaaggtattgattgtatatattcaggg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tttaactgatgggcaaggtatcaatggttgaggcaaggtattgattgtatatattcaggg 432
Query: 477 ctgtgagggctcttccagggggtcccttttgaaggaaagcatagcatctgtttaacatgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctgtgagggctcttccagggggtcccttttgaaggaaagcatagcatctgtttaacatgt 372
Query: 537 tcaaaaacagctccaagttagttcaagtaaccatcttttggtttttagctatggggagaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcaaaaacagctccaagttagttcaagtaaccatcttttggtttttagctatggggagaa 312
Query: 597 tcacaagttggc 608
||||||||||||
Sbjct: 311 tcacaagttggc 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space: 597402
Effective search space used: 597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
