BAC Information

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BAC

Clone NameMSMg01-058A21
Chromosome9 (Build37)
Map Location 91,221,656 - 91,374,382
singlet/doubletdoublet
Overlap geneZic1, Zic4
Upstream geneLOC100039777, LOC100039925, EG434428, LOC621576
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058A21.T7 (MSMg01no058_a21.b1)MSMg01-058A21.TJ (MSMg01no058_a21.g1)
ACCAG285060AG285061
length706711
length of high quality
(start - end)
455 (41 - 495)369 (75 - 443)
definitionCHROMAT_FILE: MSMg01no058_a21.b1 PHD_FILE: MSMg01no058_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:13 2005CHROMAT_FILE: MSMg01no058_a21.g1 PHD_FILE: MSMg01no058_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,221,656 - 91,222,108)(91,374,067 - 91,374,382)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGAAGGCGCGGAATTCTAT
AACAATGTCGGATATAAATGCCTACTTCTTATATTGCAGTAAGATACAAG
CTGATACACATAAAAACATGTGTGTATACACAAATTCACATGCATGTACA
TGAAGCTATTACACAAAGCGATAGGAAACAGAAATTTTGCTTCAAATCTC
ACTTCTTCAGTTCACTACTAATCCATTCATAGCATCATTTTAATCTGTCC
ATCAAGATAAGTTATATCTCTATTTTATTGCCCAATCATTTTCAATTTTT
AAGTACATTATATTTCTGGCTCCACATTTATGTGTTAATGCCTTTATGCC
TTCATACTTCCTAATCACGTGTTCAATGAAGATTTGTGCTTGCTGTTGCT
AAAGTTAGTAGTTATCATATTTTTGGTCAATGTTAGATTTTCTCCAACTT
TTTGAAAATGTCTAATTCCTTTTCTTTTTTCCTTTTTTTTTTTCTTTTTG
GGCAGGGNTTCTCTGCATAGCCTACATACTCTTGAAACTCTCACTATGTA
GACTACGCTGACCTTGTACTGACAGAGATAGAGATCCATCTCTCTCGGTT
TCCTAGAGGGACACCTGNACTGCGTCTAATTCTTAGTTGNCGAAGAGTGC
ATGACAAAGCACCGCAGAGTGGGTATTACTGTGTGCACAGGCGCAGCATA
GCTGTT
NTTTCCATGCAGTGAGAGCCTGGCGACGCCTGGTTTCAAATAAAGGTGAA
CTATAGAAGGATTCCCGAAATTCCATGTACCTACACAATTGAATGATCAA
TTATAAGTGTGGGGGTATTTTGATGTGTATGAACGTTTTGCTATGTGTAT
TTCTATGCACCATACACATGCTCACAGAGCCCATGGAGGCCAGAAAAGGG
CATTGGATCCCCTGGGACTAGAATTACAAATGATTGTGAGCTGCCATGAG
GATGCTGAGAGTTGAGCCCCCCAGGTCCTCTGGTAAAGCAGCCACTGCTC
TTAAAATATAAGCTACCTCTTTAGCCCTATGAATGATCAATTTGAATACA
CTGCAAATCTTAGGTATCACCGACTAATACACATCAGTTATTAGCAGCAT
TTGACATTCTCGGTGATTCATGGACCTTCCAGGGTTCTTTTAGAAAAGAA
GTTATTTTGTTAGAATTTTAAACAGCTTAAGCAGTGAGAGCCTTCTAAGA
GTACATACACTTTCAACTTAGAATTGAAAGCCTATTTAAAAGAAGTTTTT
CAACAACACCCTTTTCAAGNCACAAATAATATAAAATATCTCGGCGTGAC
TCTAACTAAGGAAGTGAAAGATCTGCATGATAAAAACTTCAAGTCCCTGA
AGAAAGAAATTAAAGAAAATCTCAGAAGATGGAAAGATCTCCCATGCTCA
TGGATTGCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_a21.b1 MSMg01no058_a21.b1 CHROMAT_FILE:
MSMg01no058_a21.b1 PHD_FILE: MSMg01no058_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:13 2005
         (455 letters)



>mm_chr9_91221456_91222310
          Length = 855

 Score =  853 bits (441), Expect = 0.0
 Identities = 450/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaattctataacaatgtcggatataaatgcctacttcttatattgcagtaagatacaag 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattctataacaatgtaggatataaatgcctacttcttatattgcagtaagatacaag 260

                                                                       
Query: 61  ctgatacacataaaaacatgtgtgtatacacaaattcacatgcatgtacatgaagctatt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgatacacataaaaacatgtgtgcatacacaaattcacatgcatgtacatgaagctatt 320

                                                                       
Query: 121 acacaaagcgataggaaacagaaattttgcttcaaatctcacttcttcagttcactacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacaaagcgataggaaacagaaattttgcttcaaatctcacttcttcagttcactacta 380

                                                                       
Query: 181 atccattcatagcatcattttaatctgtccatcaagataagttatatctctattttattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccattcatagcatcattttaatctgtccatcaagataagttatatctctattttattg 440

                                                                       
Query: 241 cccaatcattttcaatttttaagtacattatatttctggctccacatttatgtgttaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaatcattttcaatttttaagtacattatatttctggctccacatttatgtgttaatg 500

                                                                       
Query: 301 cctttatgccttcatacttcctaatcacgtgttcaatgaagatttgtgcttgctgttgct 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 cctttatgccttcatacttcctaatcatgtgttcaatgaagatttgtgcttgctgttgct 560

                                                                       
Query: 361 aaagttagtagttatcatatttttggtcaatgttagattttctccaactttttgaaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagttagtagttatcatatttttggtcaatgttagattttctccaactttttgaaaatg 620

                                            
Query: 421 tctaattccttttcttttttccttttttttttt 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 tctaattccttttcttttttccttttttttttt 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no058_a21.g1 MSMg01no058_a21.g1 CHROMAT_FILE:
MSMg01no058_a21.g1 PHD_FILE: MSMg01no058_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:13 2005
         (369 letters)



>mm_chr9_91373614_91374382
          Length = 769

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 54  tatgaacgttttgctatgtgtatttctatgcaccatacacatgctcacagagcccatgga 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tatgaacgttttgctatgtgtatttctatgcaccatacacatgctcacagagcccatgga 710

                                                                       
Query: 114 ggccagaaaagggcattggatcccctgggactagaattacaaatgattgtgagctgccat 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggccagaaaagggcattggatcccctgggactagaattacaaatgattgtgagctgccat 650

                                                                       
Query: 174 gaggatgctgagagttgagccccccaggtcctctggtaaagcagccactgctcttaaaat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaggatgctgagagttgagccccccaggtcctctggtaaagcagccactgctcttaaaat 590

                                                                       
Query: 234 ataagctacctctttagccctatgaatgatcaatttgaatacactgcaaatcttaggtat 293
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 589 ataagctacctcttaagccctatgaatgatcattttgaatacactgcaaatcttaggtat 530

                                                                       
Query: 294 caccgactaatacacatcagttattagcagcatttgacattctcggtgattcatggacct 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 caccgactaatacacatcagttattagcagcatttgacattctcggtgattcatggacct 470

                           
Query: 354 tccagggttcttttag 369
           ||||||||||||||||
Sbjct: 469 tccagggttcttttag 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)