Query= MSMg01no058_d06.b1 MSMg01no058_d06.b1 CHROMAT_FILE:
MSMg01no058_d06.b1 PHD_FILE: MSMg01no058_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:23 2005
(408 letters)
>mm_chr9_62500554_62501361
Length = 808
Score = 743 bits (384), Expect = 0.0
Identities = 402/408 (98%), Gaps = 1/408 (0%)
Strand = Plus / Plus
Query: 1 taaaggcttgctgtacaatgggcctgcactactccatacagtaggcagcagctcacc-aa 59
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 200 taaaggcttgctgtacaatgggcctgcactactccatacagtaggcaacagctcacataa 259
Query: 60 ttcccatgcaaaccctgaagttaagagagttaacttgggttggagagttggctgagccat 119
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 260 ttcccatgcaaaccctgaagttaagagaattaacttgggttggagagttgactgagccat 319
Query: 120 taagagcactggctgctcttctagaggtcttgagttcaattcccagcaaccacatggtgg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taagagcactggctgctcttctagaggtcttgagttcaattcccagcaaccacatggtgg 379
Query: 180 ctcacaaccatctgtaatggggtctggtggcctcttctggtgtgcatgcagacagagcac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcacaaccatctgtaatggggtctggtggcctcttctggtgtgcatgcagacagagcac 439
Query: 240 tcatatacataaagtatatgtatagatatgaactcatttacataatataaataaatattt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcatatacataaagtatatgtatagatatgaactcatttacataatataaataaatattt 499
Query: 300 tttacagagagagagatgttaagccattggcccaaggtcccacaattcagtgtaagtcca 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttaaagagagagagatgttaagccattggcccaaggtcccacaattcagtgtaagtcca 559
Query: 360 cctgattccagagcccataactttgactcacctactgttccttccttg 407
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctgattccagagcccataactttgactcacctactgttccttccttg 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no058_d06.g1 MSMg01no058_d06.g1 CHROMAT_FILE:
MSMg01no058_d06.g1 PHD_FILE: MSMg01no058_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:24 2005
(326 letters)
>mm_chr9_62604485_62605210
Length = 726
Score = 553 bits (286), Expect = e-162
Identities = 322/346 (93%), Gaps = 20/346 (5%)
Strand = Plus / Minus
Query: 1 gactggcatggccttgcctca-----------aaaaacaaaaacaaaacaaaaca----- 44
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 698 gactggcatggccttgcctcaaaaaacaaaacaaaaacaaaaacaaaacaaaacaaaaca 639
Query: 45 ----aaacaaaacaaacaaaaaacaaccaagggcttgaatgtgaaactgagtggcgtggt 100
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 638 aaacaaacaaaacaaacaaaaaacaaccaagggcttgaaggtgaaactgagtggcgtggt 579
Query: 101 gtttacctggaaggtgcaagaccctaacactgatcctcagcaccgtaaaaaataaaataa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gtttacctggaaggtgcaagaccctaacactgatcctcagcaccgtaaaaaataaaataa 519
Query: 161 agtgcttgttccatgtcaatgtatactatctggcagataacaaatcccctgtcatctctg 220
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 518 agtacttgttccatgtcaatgtatactacctggcagataacaaatcccctgtcatctctg 459
Query: 221 acctgggtgtatttatttgattaccttactaataaaatgtgtaggcaaattctcgagact 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acctgggtgtatttatttgattaccttactaataaaatgtgtaggcaaattctcgagact 399
Query: 281 agatacaaccatttacatcattagctcacaactgtaggtacctaca 326
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 398 agatacaaccatttagatcattagctcacaactgtaggtacctaca 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
