BAC Information

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BAC

Clone NameMSMg01-058H07
Chromosome9 (Build37)
Map Location 122,507,825 - 122,508,066
singlet/doubletsinglet
Overlap genenone
Upstream geneLyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik
Downstream geneLOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058H07.T7 (MSMg01no058_h07.b1)MSMg01-058H07.TJ (MSMg01no058_h07.g1)
ACCAG285367AG285368
length711707
length of high quality
(start - end)
271 (44 - 314)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no058_h07.b1 PHD_FILE: MSMg01no058_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:42 2005CHROMAT_FILE: MSMg01no058_h07.g1 PHD_FILE: MSMg01no058_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTTTTCCCAAAAAGAGATGCCTTAGTGATCTCTTTGCTTTATAGT
GTGTGGGTCAGTGACTCCCCTATCTACTTGAGATGACTAGTCTTAACAAT
TTGACCTGTCTTGGGAAAATATAAACCAGCAATCACTTCCTAGAAATCCC
AAAGGCTCTAAGCAACTGGATGTTAGTGGCCTCGCAGTGGACATTTGTTA
GTTTCTTTGACTCTTCTCCGTGTAACCACCGGGTGATCAGTGACCATGGC
TTGTGTAGACTCTAATATGGGATGAAGTTCCATGTCATATCTCAAATTTC
TGTATTTTTTCTCCGCCCCCCCATGGGCCAAGCATACTTTCCCTTTGTGC
TTCAAGGATGACCACAAAGAAAAAAGAGCACAGTGAGGTCGAAAAGCACA
GCCTCATGGAGACATCTTTGCGTGTTTAGACAGTGGATGATTTTAGAAAT
TGAATGTGGCGATGCTTCTTTTGGCGTGTCTTATAAAGCTTGCCAAACGC
AGCATCCTATACTAGGTTCCACAGTCTAATGAGAAACTTGAGACATATTC
TTACTCTTATTTAAAAGTGTAACCTTCACACCAAAGCTAAACTTACAGCC
CACTGCTACATAATGTGTGGCAAGGGAAGATAAAAACCCTGCGGATAATC
TGCTCTTGATC
ATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCAGGTCAGTGCTGGTGTTTTCTTCAAT
GTCTTCTTAAGCTCTCTACCTTATTTTCTCATGTAAGGTCTCTTACTGAA
CCTGGAGCTCACCAATTCACCAGCTAGATTGGCTGCCCAGTGAACTCCAT
AGGTTACCCTGTCTCTGCACATTCAGTGTGTGCATGATAGACATGTACCT
TGGCACTTTTTTTTTCTGCTTTGTTTTGTTTTAATGTGGCTGCAAGTGAT
TCAAACTCAGGTCCTCATGCTTATATGATAAGCACTTTACCCATTGAGCC
ATCTTCTCAGTTCCCTTGAGGTTGGTGTCATGTCCTGAACTACTCTCTCT
GCTTCCTGGCTATCAAAAGGTAAGCTATGTTCTCTTCAGGCTCAAAACTA
CAAATTGAAATCTCTGAAACTTTTTTTTTTTAAACTGTTTCTCTCACGCA
TTTGTCCCAACAGTGAGAATGTCAACACAGGTCCTTGCTTCTTAACCATG
CTATGCTAAAAAACTTCCCATTCCCATAAAATACTGTTCTCTGACTCACG
CCTCACAGTTCTGATGGGAAATCCTTTTTCTTTTCCCGGATAATATTAAA
TTTGTGCACAAATTTTTCCCAGCCCCTTCTTTGTCAAAATAAATTATGTA
ACGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_h07.b1 MSMg01no058_h07.b1 CHROMAT_FILE:
MSMg01no058_h07.b1 PHD_FILE: MSMg01no058_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:42 2005
         (271 letters)



>mm_chr9_122507603_122508266
          Length = 664

 Score =  412 bits (213), Expect = e-119
 Identities = 238/249 (95%), Gaps = 7/249 (2%)
 Strand = Plus / Plus

                                                                       
Query: 23  aaagagatgccttagtgatctctttgctttatagtgtgtgggtcagtgactcccctatct 82
           |||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||
Sbjct: 223 aaagagatgccttagtgatctctt-gctttatagtgtgtgggtcagtgacttatctatct 281

                                                                       
Query: 83  acttgagatgactagtcttaacaatttgacctgtcttgggaaaatataaaccagcaatca 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acttgagatgactagtcttaacaatttgacctgtcttgggaaaatataaaccagcaatca 341

                                                                       
Query: 143 cttcctagaaatcccaaaggctctaagcaactggatgttagtggcctcgcagtggacatt 202
           |     | |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 342 c-----a-aaatcccaaaggctctaagcaactggatcttagtggcctcgcagtggacatt 395

                                                                       
Query: 203 tgttagtttctttgactcttctccgtgtaaccaccgggtgatcagtgaccatggcttgtg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgttagtttctttgactcttctccgtgtaaccaccgggtgatcagtgaccatggcttgtg 455

                    
Query: 263 tagactcta 271
           |||||||||
Sbjct: 456 tagactcta 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 664
Length adjustment: 9
Effective length of query: 262
Effective length of database: 655
Effective search space:   171610
Effective search space used:   171610
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)