BAC Information

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BAC

Clone NameMSMg01-058J17
Chromosome9 (Build37)
Map Location 112,784,424 - 112,784,961
singlet/doubletsinglet
Overlap genenone
Upstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip, Clasp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058J17.T7 (MSMg01no058_j17.b1)MSMg01-058J17.TJ (MSMg01no058_j17.g1)
ACCAG285482AG285483
length717703
length of high quality
(start - end)
229 (127 - 355)539 (75 - 613)
definitionCHROMAT_FILE: MSMg01no058_j17.b1 PHD_FILE: MSMg01no058_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:54 2005CHROMAT_FILE: MSMg01no058_j17.g1 PHD_FILE: MSMg01no058_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGTTTCTACATAAACATAATAAAATCAACATACAGCAAACCA
ACAGCCAACATCAAATTAAACCGCCAAAGAAACTTGAAGCAATCCCACCA
AAATCAGTGACAAGACAAGGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTGCCCTCCCCCTCCCCCTCTCCCTCTCTCTC
TCCTTCATATAGTACTTTAAATTCTAGCTAGAAAAATTATACAACAAAAG
GAGGTCAAAGGGATATGAATTTTATTGGAAGAAGTCAATATAGCATTATT
TGCAGATGATTTTTTTTTGCACCCCACCCCCTCCAAAAATTCTATCACAG
AGCTCCTATACCTGATAAACAAATACAAAAAAATAGCTAGATGGGAGATT
AACTCAAACAAATCAGTAGCCTTTCTTTATACCAAGAATAAGTTAGCTAA
CAAAGAAATTATGGAAACCACATTACTCCACAGTAGTCACAAGTAATAAA
CAACATCCTGCCATAATTTTACCCAAGAAAAGTGAAAAATCTGTATGACA
AGAACTTTAAGTCTCTTGAAAAAAGAAATCAAAAGACTCTTCACAATAAG
AAAAGATTTCCCATGCTCATGGAATTAACTTATTAAAACAGGTCACATCT
TTAAAAAAGTAATCTAG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGACCAGCCAGAGATACATAATGAG
ACCCTGTCTCAAAACAAAAGAAGCCAAATATTTTGAAAAGAAACCACTTT
AATACTTAAAGTTCCAATATCTGTGACATCATTTTCCCCAATCCCAGAAT
CCCAGCTCACCATTTAACATGCACAAACATAGACAACACAACCTTGTGAC
CAAATACCTGGACTGTAGAGAAATAGTTGATTCTTAATTTTGTAGCTATC
AATGTGTCTATCTGCTCATTACTCACTGGGGTATCAGTTTTATATGTAAC
ACAGTGGGTGACCGGCACAGTGCTCTGAACAGTGGCAGAATCCATAGGAA
CACAGCTGTGAGCTTTTCTGTTATCAGGATAGGTGCACAGTAGTGGGGAC
CTAACACTCTCAGTCACAGACAGACAATGGCGTGGGAGAACTTGAACATT
TTCTAAATGAAAAACAAGCAGAATTCATTCTAACACCCTGCGTCCTAGCT
ACCATCCACTGCTTCTGCATCACTGGAGTTGGGCAGGCATATTCATCTCT
CTAGGAAAGAGACTGGGAGACAGAAAGGCCCTCTATGCTCATGCTCCCTT
GACCACTCACACTGCTTTATACATCCCTGTGGCTGAAATGCATGTAATGT
GTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_j17.g1 MSMg01no058_j17.g1 CHROMAT_FILE:
MSMg01no058_j17.g1 PHD_FILE: MSMg01no058_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:54 2005
         (539 letters)



>mm_chr9_112784224_112785161
          Length = 938

 Score =  957 bits (495), Expect = 0.0
 Identities = 528/539 (97%), Gaps = 1/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaccagccagagatacataatgagaccctgtctcaaaacaaaagaagccaaatatttt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaccagccagagctacataatgagaccctgtctcaaaacaaaagaagccaaatatttt 260

                                                                       
Query: 61  gaaaagaaaccactttaatacttaaagttccaatatctgtgacatcattttccccaatcc 120
           |||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 261 gaaaagcaactactttaatacttaaagttgcaatatctgtgacatcattt-ccccaatcc 319

                                                                       
Query: 121 cagaatcccagctcaccatttaacatgcacaaacatagacaacacaaccttgtgaccaaa 180
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 cagaatcccagctcaccgtttaacatgcacaaacacagacaacacaaccttgtgaccaaa 379

                                                                       
Query: 181 tacctggactgtagagaaatagttgattcttaattttgtagctatcaatgtgtctatctg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 380 tacctggactgtagagaaatagttgattcctaattttgtagctatcaatgtgtctttctg 439

                                                                       
Query: 241 ctcattactcactggggtatcagttttatatgtaacacagtgggtgaccggcacagtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 ctcattactcactggggtatcagttttatatgtaacacagtgggtgaccgggacagtgct 499

                                                                       
Query: 301 ctgaacagtggcagaatccataggaacacagctgtgagcttttctgttatcaggataggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgaacagtggcagaatccataggaacacagctgtgagcttttctgttatcaggataggt 559

                                                                       
Query: 361 gcacagtagtggggacctaacactctcagtcacagacagacaatggcgtgggagaacttg 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 gcacagtagtggggacctaacactctcagtcacagacagacaatggtgtgggagaacttg 619

                                                                       
Query: 421 aacattttctaaatgaaaaacaagcagaattcattctaacaccctgcgtcctagctacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacattttctaaatgaaaaacaagcagaattcattctaacaccctgcgtcctagctacca 679

                                                                      
Query: 481 tccactgcttctgcatcactggagttgggcaggcatattcatctctctaggaaagagac 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tccactgcttctgcatcactggagttgggcaggcatattcatctctctaggaaagagac 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space:   490912
Effective search space used:   490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)