NTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCACAGAGTAACGGAGGTAGTTGGGTGTGGTGGTTCATG
ACTGTAATAGGAGATGTTGATAAAAGAACAAGGACTTCAAGGTCCACATC
ATTACATAGTGTGGCTGAGGCCTGTCTGAGCAACAGGAGACTTTGTCTCA
GAAAGAAAACCAAGGTGACAATGAAAGGATGAATGGAAGCCCTGGTCTCC
ATGCATACAACAAACCCACTGCTGACTTGTGAAAAGAATGCATGTGAGTT
CATCCTTCCGCCTCAGTCGAGACTTTAAGGTGATGGCTTTGACCATAATT
TTATTGGTATTATTTAAAATTAAATTTAATTGGATTAAAAGGTGCTTCCT
TTCATTTCAATTTCAGCACTGAACACGCCGAGGCAAGACATAGCCAACAC
TTTAAGGCTATATCTTGGGCTCTATGGCAAAAACTACTTCTGTCTCAAAA
ATAATCCTTCTTTGTACTGGTAACATCTCACATCTCAACATCTTGGCTGT
GGCCATCATATTGAACAATGACAACAGGACATTTTCTTTTTTTTGCACAA
GGTTCATTTGGACATAGTTATGATTAAGACAATTGTCTTAATCTTCCCTA
GCCCTGACCTTCTGTAATAGAGGTAAGAAGGTTTAGAATAACTATCTAAA
GTTTTCTA

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTATCAGGCCCTGTTTGGCCTCA
AAATAGCACAGGGACATAGAGCTGATTCCTGGACTTACTTTCTCTGTTGA
GAATTGGGGAGGGAGGCACAGCCAATGTCTTCTGAGCTCTCCTGGGGTTG
CCTGGGAAGGAGGGGGCACAAAATGGGGTGGTAATAGCCACCAGGAGAGG
CAGGAACATACAAAATAGCAAAGTCCCAGGGGGCAATTTAATTTTAGACT
CAAGGCCAGGAAATTCTTTTTAAAACAATGAGGAGTGATAGGCTTGGACC
TTGGTGAAAGGGCAAGCTTGACCCTCTAAAGACTCTGGGAAACAAAAAGA
AGCAAGACAGAGGGCTGAGTGACAGAGGTGGTGTTCTTCATGGGGAGCTG
CTTTTGGCTTCCCTGCAGACCATAAGGCTTCCACTCACATCCGACGTTCA
CTGAGACCCAGTGCAACAGCGTGGGAATGGTGGAGTGTTAACAAGTCCCT
GGAAGTCTGAAGACCTTACTGCCTTGTGGAGAGACATTTCTAGGTGAAAT
GGATATCAATTGTCAGCTTCGAATTCCTAGGGTCTCTCTGTTACCCCTCA
CTCAGCCAGAAGCCCTTAAACTTGTAACAGTACCCTCACGGGATGGCAGT
TTC

Query= MSMg01no059_c02.b1 MSMg01no059_c02.b1 CHROMAT_FILE:
MSMg01no059_c02.b1 PHD_FILE: MSMg01no059_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:33 2005
         (524 letters)



>mm_chr9_32330490_32331413
          Length = 924

 Score =  982 bits (508), Expect = 0.0
 Identities = 520/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtagttgggtgtggtggttcatgactgtaataggagatgttgataaaagaacaaggac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 aggtagttgggtgtggtggttcatgactgtaacaggagatgttgataaaagaacaaggac 260

                                                                       
Query: 61  ttcaaggtccacatcattacatagtgtggctgaggcctgtctgagcaacaggagactttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaggtccacatcattacatagtgtggctgaggcctgtctgagcaacaggagactttg 320

                                                                       
Query: 121 tctcagaaagaaaaccaaggtgacaatgaaaggatgaatggaagccctggtctccatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcagaaagaaaaccaaggtgacaatgaaaggatgaatggaagccctggtctccatgca 380

                                                                       
Query: 181 tacaacaaacccactgctgacttgtgaaaagaatgcatgtgagttcatccttccgcctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaacaaacccactgctgacttgtgaaaagaatgcatgtgagttcatccttccgcctca 440

                                                                       
Query: 241 gtcgagactttaaggtgatggctttgaccataattttattggtattatttaaaattaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcgagactttaaggtgatggctttgaccataattttattggtattatttaaaattaaat 500

                                                                       
Query: 301 ttaattggattaaaaggtgcttcctttcatttcaatttcagcactgaacacgccgaggca 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ttaattggattaaaaggtgcttcctttcatttcaatttcatcactgaacacgccgaggca 560

                                                                       
Query: 361 agacatagccaacactttaaggctatatcttgggctctatggcaaaaactacttctgtct 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaatagccaacactttaaggctatatcttgggctctatggcaaaaactacttctgtct 620

                                                                       
Query: 421 caaaaataatccttctttgtactggtaacatctcacatctcaacatcttggctgtggcca 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 caaaaataatccttctttgtactggtgacatctcacatctcaacatcttggctgtggcca 680

                                                       
Query: 481 tcatattgaacaatgacaacaggacattttcttttttttgcaca 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatattgaacaatgacaacaggacattttcttttttttgcaca 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_c02.g1 MSMg01no059_c02.g1 CHROMAT_FILE:
MSMg01no059_c02.g1 PHD_FILE: MSMg01no059_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:34 2005
         (573 letters)



>mm_chr9_32463696_32464668
          Length = 973

 Score = 1062 bits (549), Expect = 0.0
 Identities = 567/573 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatcaggccctgtttggcctcaaaatagcacagggacatagagctgattcctggactta 60
           |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 773 ttatcaggccgtgtttggcctcaaaatagtacagggacatagagctgattcctggactta 714

                                                                       
Query: 61  ctttctctgttgagaattggggagggaggcacagccaatgtcttctgagctctcctgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctttctctgttgagaattggggagggaggcacagccaatgtcttctgagctctcctgggg 654

                                                                       
Query: 121 ttgcctgggaaggagggggcacaaaatggggtggtaatagccaccaggagaggcaggaac 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtgcctgggaaggagggggcacaaaatggggtggtaatagccaccaggagaggcaggaac 594

                                                                       
Query: 181 atacaaaatagcaaagtcccagggggcaatttaattttagactcaaggccaggaaattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atacaaaatagcaaagtcccagggggcaatttaattttagactcaaggccaggaaattct 534

                                                                       
Query: 241 ttttaaaacaatgaggagtgataggcttggaccttggtgaaagggcaagcttgaccctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttttaaaacaatgaggagtgataggcttggaccttggtgaaagggcaagcttgaccctct 474

                                                                       
Query: 301 aaagactctgggaaacaaaaagaagcaagacagagggctgagtgacagaggtggtgttct 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaaggctctgggaaacaaaaagaagcaagacagagggctgagtgacagaggtggtgttct 414

                                                                       
Query: 361 tcatggggagctgcttttggcttccctgcagaccataaggcttccactcacatccgacgt 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcgtggggagctgcttttggcttccctgcagaccataaggcttccactcacatccgacgt 354

                                                                       
Query: 421 tcactgagacccagtgcaacagcgtgggaatggtggagtgttaacaagtccctggaagtc 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcaccgagacccagtgcaacagcgtgggaatggtggagtgttaacaagtccctggaagtc 294

                                                                       
Query: 481 tgaagaccttactgccttgtggagagacatttctaggtgaaatggatatcaattgtcagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgaagaccttactgccttgtggagagacatttctaggtgaaatggatatcaattgtcagc 234

                                            
Query: 541 ttcgaattcctagggtctctctgttacccctca 573
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ttcgaattcctagggtctctctgttacccctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)