Query= MSMg01no059_c05.b1 MSMg01no059_c05.b1 CHROMAT_FILE:
MSMg01no059_c05.b1 PHD_FILE: MSMg01no059_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:34 2005
(549 letters)
>mm_chr9_54486201_54487150
Length = 950
Score = 980 bits (507), Expect = 0.0
Identities = 535/545 (98%), Gaps = 3/545 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcctacctgctcagaaaagaaagtccctaggagagggcagagggtcaggacat 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctacctgcttagaaaagaaagtccctaggagagggcagagggtcaggacat 263
Query: 64 gaagcac--tgtctggataatgtctaggagaagccgagtcccttgatccctggaaaagtc 121
||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 gaagcacactgtctgaataatgtctaggagaagccaagtcccttgatccctggaaaagtc 323
Query: 122 tctccatgaacccttcagacgtgtctttggttggcagagatggattttctcctggctccg 181
||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||
Sbjct: 324 tctccatgaacccttcagacgtgtctttggttgacagagatagattatctcctggctccg 383
Query: 182 tttcatagatacaccatttctccagaacccggggaatcccttcccactttcccctaatcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttcatagatacaccatttctccagaacccggggaatcccttcccactttcccctaatcc 443
Query: 242 tgttccccaaaacaggttaaagtgacagctgggccccttcagactccctagcttccggct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgttccccaaaacaggttaaagtgacagctgggccccttcagactccctagcttccggct 503
Query: 302 atgagcttcttgagataaggatagaaacctgtttgttgacttctgtctctccagtttggt 361
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagagcttcttgagata-ggatagaaacctgtttgttgacttctgtctctccagtttggt 562
Query: 362 tctccagcctggaccctgacatgtgcccctgggataagagtaagggactagaaaaatggt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctccagcctggaccctgacatgtgcccctgggataagagtaagggactagaaaaatggt 622
Query: 422 ttaaaacccttgggcctcagaggtcctccctggcctagggaccaagctgggccaagcgcc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttaaaacccttgggcctcagaggtcctccctggcctagggaccaagctgggccaagcgcc 682
Query: 482 tccagttcccaatcctcagcttgtcccagtcctccaggtaggactgacaacctcctgggg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tccagttcccaatcctcagcttgtcccagtcctccaggtaggactgacaacctcctgggg 742
Query: 542 ggagg 546
|||||
Sbjct: 743 ggagg 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space: 506660
Effective search space used: 506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_c05.g1 MSMg01no059_c05.g1 CHROMAT_FILE:
MSMg01no059_c05.g1 PHD_FILE: MSMg01no059_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:34 2005
(512 letters)
>mm_chr9_54647067_54647978
Length = 912
Score = 951 bits (492), Expect = 0.0
Identities = 507/512 (99%)
Strand = Plus / Minus
Query: 1 accctagtcaggccagagaagaaaaagctgagtttattttatacattgtaacagtgtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 accctagtcaggccagagaagaaaaagctgagtttattttatacattgtaacagtgtggg 653
Query: 61 ggaccaaggcaggaataaaggtatagaagtagatgggctatggtggcttttcctgaggtt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggaccaaggcaggaataaaggtacagaagtagatgggctatggtggcttttcctgaggtt 593
Query: 121 cctgacatgcaattcctactgtgcaaatgagggcagtcctgacttattgatgttggggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cctgacatgcaattcctactgtgcaaatgagggcagtcctgacttattgatgttggggtc 533
Query: 181 ttggttgacagggtgacagttttgatactcagtcgtgtttgattttgagcggttatgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttggttgacagggtgacagttttgatactcagtcgtgtttgattttgagcggttatgctc 473
Query: 241 agtcatgctatccctccagtatggtttggctaaacatgagttgttgtgttttgtagtatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 472 agtcatgctatccctccagtatggtttggctaaacatgagttgttgtgttttgcagtatt 413
Query: 301 atcagggatgcttcctggacaagacttgtactgtgtaaattccctgaaactgactctctc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atcagggatgcttcccggacaagacttgtactgtgtaaattccctgaaactgactctctc 353
Query: 361 tgtttctggcctctgtcccacagtcactactgacaaagaaacaaactcaatcggagacat 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 352 tgtttctggcctctgtcccacagtcactactgacaaagaaacaaactcagtcggagacat 293
Query: 421 taggtgaaggtttctttttcagtggtttctttgaggtgggcaggtgtgatttgtgggcgc 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 taggtgaaggtttcttcttcagtggtttctttgaggtgggcaggtgtgatttgtgggcgc 233
Query: 481 tgtcttttatcattctggcagggcatctgtga 512
||||||||||||||||||||||||||||||||
Sbjct: 232 tgtcttttatcattctggcagggcatctgtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
