BAC Information

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BAC

Clone NameMSMg01-059P21
Chromosome9 (Build37)
Map Location 34,287,043 - 34,287,487
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059P21.T7 (MSMg01no059_p21.b1)MSMg01-059P21.TJ (MSMg01no059_p21.g1)
ACCAG286541AG286542
length698701
length of high quality
(start - end)
632 (67 - 698)598 (75 - 672)
definitionCHROMAT_FILE: MSMg01no059_p21.b1 PHD_FILE: MSMg01no059_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:38 2005CHROMAT_FILE: MSMg01no059_p21.g1 PHD_FILE: MSMg01no059_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATAATTTGCGGCGCTNTACGACTCCTATATTCAGAGAAGGCGCGGAA
TTCTGAAATTGTACCGGAATCCCTGATGCTGTGTGTGATGCTTGGCCCAG
GGTGTAGCACTATTAGAAGCTGTGGCCCTGTTGGAGTAGGTGTGTCACTG
TGGGTGTGGGCTTTAAGACCCCTTTTCTAGCTACCTGGAAGTCAATATTC
TGCTAGAAGCCTTCAGATGAAGATGTAGAATTCTCAGATCTTCCTGTACT
ATGCCTGCCTGGATGCTACCATGTTCCCGCTTTGATGATACTGGACTGAA
TCTCTGAACCTGTAAGCCATTCTTAATTAAATGTTGTCCTTTATAAGACT
TGCTTTGGTCATGGTGTCTGTTCACATCAGTAAAACGCTAAGACACTGTG
TTTTAACAGTCCTTTCAGATAATTTTAATGCATTCAAGAACTATTGTTAT
GAGCCTTCCTGTGTACCATTACCTAGTAAAATAATAATGAAGCTGTATCT
AAGCTTGTTCTACCTATCTTCCTTGCTTCCCTCCATCCCATTGGAATTTT
TTAAAGCAAATTCAACTCAGATATCATATGCTTTCTTCACCCACAAGTAT
GTCCCCATGCAGTCAGGACTTTAATAAAGATAAAACAATACTTTACTATT
ATATTTGTTAGATCGGGACCAAAATCTCTAGACCCTTTATCTTTAAGT
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCAGAAATTCAAAGAAGATCTCAGAAGATGGAAAGA
TCTCCCATGGTCATAGATTGGCAGGATTAATATAGTCACAATGGCCATCT
TCCTGAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACT
CAATTTTTCACTGAGTTAGAAAGAGCAATTTGCAAATTCATCTGGAATAA
CAAAAAACCTTGGATAGCAAAAACAATTCTCAACAATAAAAGAAATTCTG
GTGGAATCACCATCTCTGACCACATGTTGAACTACAGACAATTGTGATTA
AAAACTTCATGGTACTGGTACAGTGTCAGACAGGTAGATCAATGGAATAG
AATTGAAGACTCAGAAATTAACCCACACACCTATGCTCACTTAATCTTTG
ACAAAGGAGCTTTAGCTGGATGGTTTTAACCATCCAGTGGAAAAAAGACA
GCATTTTCAACAAACGGTGCTGGCTCAGCTGGCAATTAGCATGTAGAAGA
ATGCATTCTTTGCTCCTTGTACAAAGCTCAAGTTCAAGAGGATCAAGGAC
CTCCACATAAATCCATAAACACTGAAACTTATAGAGGAGAAAGTGGGGGA
AAGCCTCTAATATATGGTCACAGGGGACAAATTCCTGAACAGAACACCAA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_p21.b1 MSMg01no059_p21.b1 CHROMAT_FILE:
MSMg01no059_p21.b1 PHD_FILE: MSMg01no059_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:38 2005
         (632 letters)



>mm_chr9_34286463_34287491
          Length = 1029

 Score =  812 bits (420), Expect = 0.0
 Identities = 440/448 (98%), Gaps = 3/448 (0%)
 Strand = Plus / Minus

                                                                        
Query: 185  atgcctgcctggatgctaccatgttcccgctttgatgatactggactgaatctctgaacc 244
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1025 atgcctgcctggatgctaccatgttcctgctttgatgatactggactgaatctctgaacc 966

                                                                        
Query: 245  tgtaagccattcttaattaaatgttgtcctttataagacttgctttggtcatggtgtctg 304
            ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  tgtaagccattcccaattaaatgttgtcctttataagacttgctttggtcatggtgtctg 906

                                                                        
Query: 305  ttcacatcagtaaaacgctaagacactgtgttttaacagtcctttcagataattttaatg 364
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  ttcacatcagtaaaaccctaagacactgtgttttaacagtcctttcagataattttaatg 846

                                                                        
Query: 365  cattcaagaactattgttatgagccttcctgtgtaccattacctagtaaaataataatga 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  cattcaagaactattgttatgagccttcctgtgtaccattacctagtaaaataataatga 786

                                                                        
Query: 425  agctgtatctaagcttgttctacctatcttccttgcttccctccatcccattggaatttt 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  agctgtatctaagcttgttctacctatcttccttgcttccctccatcccattggaatttt 726

                                                                        
Query: 485  ttaaagcaaattcaactcagatatcatatgctttcttcacccacaagtatgtccccatgc 544
            |||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||
Sbjct: 725  ttaaagcaaattcaactcagatattatatgctttc---acccacaagtatgtccccatgc 669

                                                                        
Query: 545  agtcaggactttaataaagataaaacaatactttactattatatttgttagatcgggacc 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668  agtcaggactttaataaagataaaacaatactttactattatatttgttagatcgggacc 609

                                        
Query: 605  aaaatctctagaccctttatctttaagt 632
            ||||||||||||||||||||||||||||
Sbjct: 608  aaaatctctagaccctttatctttaagt 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1029
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1019
Effective search space:   633818
Effective search space used:   633818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)