BAC Information

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BAC

Clone NameMSMg01-060A08
Chromosome9 (Build37)
Map Location 100,679,923 - 100,680,280
singlet/doubletsinglet
Overlap geneStag1
Upstream geneSox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486
Downstream geneLOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060A08.T7 (MSMg01no060_a08.b1)MSMg01-060A08.TJ (MSMg01no060_a08.g1)
ACCAG286563AG286564
length778724
length of high quality
(start - end)
104 (68 - 171)359 (75 - 433)
definitionCHROMAT_FILE: MSMg01no060_a08.b1 PHD_FILE: MSMg01no060_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:40 2005CHROMAT_FILE: MSMg01no060_a08.g1 PHD_FILE: MSMg01no060_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATTCAAAGAGGATCCGCGGAAT
TCTATATTATCCAAAGGCACTTCATTTAAGTCCCAGTACTGCCCCGTCTT
AGTGAGCCTTTCCCAGACCTTACTTTTTTTTTTTTGGCTTTTTTTTTTTT
TTTTTGGGTTTTCGAGACAGGCTTTCTCTGTATAGTCCTGGCTGTCCTGG
ATCTCACTCTGTATACCAGGTTGGCCTCCCACTCACAAATCTGCCTGTCT
CTGCCTCCCAAGCGCTGGGATTATAGGCATGTTGTTCTCATGCCCGTTTC
ATACCTCACCCTTGCTATACGCCTAGACCTGTGTTCTGCTAATCCAAAAA
TTTTTTTTTGCTTCCCCCACCCACTCATCGCCCCCTATAAATACTACCTG
CGTTCATCTCTCTCCCCTCCTCATATATATATATCTCTTCTCTCTCTTTC
TTCCTCCTCCCACTCTCCTCTTTCCCCTTTTTCTCCCCTTCTCCTCTTCA
TCCCTTTCCCTCTTCCAACTTCCCCCACCCCCTCTTCCCCCCCCCACTTT
TCCCTCTTCCCGCCTCACTTTTCTCCCTACTCCCATACATTTCCTCTATT
AACCCACCCTTCTCTCTTTCTCCCTCCTCTCTTTCCCTCCCCCTTATTAT
TTCTCCTCTCCATCATCTTCCTTCTCCCCTCCCCTTCCCCTACATATTCA
CCTCCCTTTCTCCCCCCCCCCGCCCCCTATCTCCCCATTCCTCTTTCCTT
ACCACCTTTCTCCTTTCTCGCCTCTTTG
ATGAACGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGAAAATCAGCCTATCTTTACTTTC
CAAGAGCTGAAACTAAAGATCTGTGTCAAGACACCCATAAACAGCAAATT
TTATGTTTAAGAATGTCTCAGACTGCAACATATAAGAGATCGGTCACATT
TTATGTATGGTCAAAACAATTTATGTAGGAAATCCAATTTTTGAACCTTA
GGCCACACTGGAAACTATAATCCAAAGCATACTGATTTATGTGCAAATTA
AATCCAGTAATTAAGAAAATAGCTCAGCTGATAGTACGTATGCCCATCAA
GCATGTAGACCTGATTTCCCCCCTGAAACACAAATGCAAACAGTTGGGGA
TGGTAATACATGCTTGTAATCCTAGATCTTGGGTACTATAAAGGCAAATC
ACTGAGGCTAACAACTGGATTCCATGATAAGGCATCAGTAAAATCAAACA
TAAGATAAAAGCCCACATAATTTACAGATTAAAAGCTTTAAAATGACCAG
CGGGTCAGAGAATCTCTTTTAGCTATGCACTAGTTGTCTAATGATTCCTT
TTGCAATAAATAAATTCATTTATCCTCGAAATCCCTTTTATTTTATACTT
CGTACCTGTATCGCATTAATAACAGCTTTCTAATTTAATGCTCTTCTCTT
ACCCCACTAACTGTCCAATCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_a08.g1 MSMg01no060_a08.g1 CHROMAT_FILE:
MSMg01no060_a08.g1 PHD_FILE: MSMg01no060_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:40 2005
         (359 letters)



>mm_chr9_100679845_100680602
          Length = 758

 Score =  648 bits (335), Expect = 0.0
 Identities = 353/359 (98%), Gaps = 1/359 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaaatcagcctatctttactttccaagagctgaaactaaagatctgtgtcaagacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atgaaaatcagcctatctttactttccaagagctgaaactaaagatctgtgtcaagacac 377

                                                                       
Query: 61  ccataaacagcaaattttatgtttaagaatgtctcagactgcaacatataagagatcggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 376 ccataaacagcaaattttatgtttaagaatgtctcagactgcaacatataagagat-ggt 318

                                                                       
Query: 121 cacattttatgtatggtcaaaacaatttatgtaggaaatccaatttttgaaccttaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cacattttatgtatggtcaaaacaatttatgtaggaaatccaatttttgaaccttaggcc 258

                                                                       
Query: 181 acactggaaactataatccaaagcatactgatttatgtgcaaattaaatccagtaattaa 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acactggacactataatccaaagcatactgatttatgtgcaaattaaatccagtaattaa 198

                                                                       
Query: 241 gaaaatagctcagctgatagtacgtatgcccatcaagcatgtagacctgatttcccccct 300
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 197 gaaaatagctcagctgatagaacgcatgcccatcaagcatgtagacctgatttcccccct 138

                                                                      
Query: 301 gaaacacaaatgcaaacagttggggatggtaatacatgcttgtaatcctagatcttggg 359
           |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 137 gaaacacaaatgcaaacagttggggatggtaatacacgcttgtaatcccagatcttggg 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 758
Length adjustment: 9
Effective length of query: 350
Effective length of database: 749
Effective search space:   262150
Effective search space used:   262150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)