BAC Information

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BAC

Clone NameMSMg01-060B16
Chromosome9 (Build37)
Map Location 5,278,022 - 5,278,680
singlet/doubletsinglet
Overlap genenone
Upstream geneAasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060B16.T7 (MSMg01no060_b16.b1)MSMg01-060B16.TJ (MSMg01no060_b16.g1)
ACCAG286627AG286628
length720685
length of high quality
(start - end)
669 (52 - 720)577 (72 - 648)
definitionCHROMAT_FILE: MSMg01no060_b16.b1 PHD_FILE: MSMg01no060_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:45 2005CHROMAT_FILE: MSMg01no060_b16.g1 PHD_FILE: MSMg01no060_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAGAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTATTTACTTATACAGTCAGGACATGATCTCTGATTTTT
TTTTTTTAATTCTTAAATTTCACCTCAAGGTGAGTAGTCTTAAACCTGAA
ATGTTGGAATCCTCCAGGATTCCAACCCATCATTCTTGTTACTCTTTGAA
GCTAATATCTGATATGTACCCTTTATTCTTAGTCATTGAAACCACTATTT
ATGCAACATAATACCACACAAAAACTTCTGTGTTCCTCCAATCATGTTGT
CCTCAACCATATGTGAATTAAAATTTCCCTTATTCCCTTTCAGAGAAGCA
TGGCATTCCCTGTAAAAGTTCAGGTGATGTCATTTTCAATAATCTGTTTT
TTACTCTCTACTCCTTCTAGAACATAAGATAAAAAATCAAGAACGATGTC
TGATCCTTTTCACAGGATTACCATGAGACATCCTATAGACTAAAAAGGTT
TCGTGGTAAAGTGTTTTCATGATTTAAATATCTTTTTATATTCCAACTCA
ATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACA
AAAAACCTAGGATAGCAAAAAGTCTTCTCAAAGATGAAAGAACCTCTGGT
GGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAA
AACTGCATGGTACTTGTTTA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATGTCCTTCAACAGAGGAACAGATAATC
TGTTACATTTACTCAATGTAGTATTACTTAGCTATTAAAAACAATGACTT
TTGCTTCATTGTGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGTTTCCTGAGAGAGACTGCCAGAGCCTGACAAATACAGACACAGATGC
TGGCAGCCAACAACTGGACTGAGTACCGGGTCCCCAAAGAAGGACTTAAA
GGACTTAAGGAGCTGAAGGGGTTTGCAACCCATATGGAGAACAACAATAT
CAACCAACCAGACACCTCAGACCCCCCCAGACCAAAGAGTACACATGGAG
GGACCCATGGCTCCAGCCACATATGTAGCAGAGTCTGGAATCAATGGAAG
GAGGGGCCCTTGGTACTGGGAAGGCTCAATTCAGAGGCAGGAATGGGTGG
GTCAGTGGGGGAGCACCCTCATAAAAGCAGGGAGAGGGAAGATGGAATAG
GGGTTTCTGGAAGGGAAACTGGGAAACAGGGATAACATTTGAAATTTAAA
TAAATAAAATATCCAAAAATATTCACTTCTGACAAGCCCCCAGGGTCTCG
AGGGCAATAGTGAGGATTGAAATGAAAAAAACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_b16.b1 MSMg01no060_b16.b1 CHROMAT_FILE:
MSMg01no060_b16.b1 PHD_FILE: MSMg01no060_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:45 2005
         (669 letters)



>mm_chr9_5277993_5279061
          Length = 1069

 Score = 1205 bits (623), Expect = 0.0
 Identities = 650/659 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatttacttatacagtcaggacatgatctctgattttttttttttaattctta 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 688 gaattcctatttacttatacagtcaggacaagatctctgattttttttttttaattctta 629

                                                                       
Query: 65  aatttcacctcaaggtgagtagtcttaaacctgaaatgttggaatcctccaggattccaa 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatttcacctcaagatgagtagtcttaaacctgaaatgttggaatcctccaggattccaa 569

                                                                       
Query: 125 cccatcattcttgttactctttgaagctaatatctgatatgtaccctttattcttagtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cccatcattcttgttactctttgaagctaatatctgatatgtaccctttattcttagtca 509

                                                                       
Query: 185 ttgaaaccactatttatgcaacataataccacacaaaaacttctgtgttcctccaatcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttgaaaccactatttatgcaacataataccacacaaaaacttctgtgttcctccaatcat 449

                                                                       
Query: 245 gttgtcctcaaccatatgtgaattaaaatttcccttattccctttcagagaagcatggca 304
           |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 448 gttgtcctcaaccatatgtgaaataaaatttcccttattccctttcacagaagcatggca 389

                                                                       
Query: 305 ttccctgtaaaagttcaggtgatgtcattttcaataatctgttttttactctctactcct 364
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 388 ttccctgtaaaagttcaggtgatgtcattttaaacaatctgttttttactctctactcct 329

                                                                       
Query: 365 tctagaacataagataaaaaatcaagaacgatgtctgatccttttcacaggattaccatg 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tctagaacataagatataaaatcaagaacgatgtctgatccttttcacaggattaccatg 269

                                                                       
Query: 425 agacatcctatagactaaaaaggtttcgtggtaaagtgttttcatgatttaaatatcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agacatcctatagactaaaaaggtttcgtggtaaagtgttttcatgatttaaatatcttt 209

                                                                       
Query: 485 ttatattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttatattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaa 149

                                                                       
Query: 545 taacaaaaaacctaggatagcaaaaagtcttctcaaagatgaaagaacctctggtggaat 604
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 148 taacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaat 89

                                                                      
Query: 605 caccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtact 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  caccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtact 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)